FC931614

Overview
NameFC931614
Unique NameFC931614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 72/138 (52.17%), Postives = 98/138 (71.01%), Query Frame = 1
Query:    4 QYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            ++AWV+D LK ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD A+L+  +  G  +       QT+EH  L+ TLG+ Q+I   NKMDA    Y + RY+E+ +EVS  L+ +G+ P+++PF+P
Sbjct:   55 EFAWVMDSLKEERERGITIDIAHRRFDTEKYYFTVVDCPGHRDFVKNMITGASQADAAILVCAAPDGVMQ-------QTKEHIFLSKTLGINQLIIAVNKMDAI--NYDQKRYNEVKEEVSKILRMIGFKPDQIPFIP 183          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 74/137 (54.01%), Postives = 97/137 (70.80%), Query Frame = 1
Query:    7 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            +AWV+D LK ERERGITIDIA  +F+T KYY TV+D PGHRDF+KNMITG SQAD AV+++ +  G  E       QT+EH  L+ TLG+KQ+I   NKMDA    Y +AR++++  +V + LK VG NP+ V F+P
Sbjct:   56 FAWVMDNLKEERERGITIDIAHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVIVVAAPDGVME-------QTKEHVFLSKTLGIKQLIVAVNKMDAA--NYDEARFNQVKSDVGALLKMVGTNPDTVKFIP 183          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_METBU (Elongation factor 1-alpha OS=Methanococcoides burtonii (strain DSM 6242) GN=tuf PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 75/137 (54.74%), Postives = 96/137 (70.07%), Query Frame = 1
Query:    7 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            +AWV+D LK ERERG+TIDI+  +F+T KYY TV+D PGHRDF+KNMITG SQAD AVL++ +  G          QT+EH  L+ TLG+ Q+I   NKMDA   KYS+ RY+E+ KEVS  L  VG+  + VPF+P
Sbjct:   55 FAWVMDTLKEERERGVTIDISHKRFDTDKYYFTVVDCPGHRDFVKNMITGASQADAAVLVVAAPDGVM-------AQTKEHVFLSRTLGINQLIVAINKMDAA--KYSEDRYNEVKKEVSQLLGMVGFKADDVPFIP 182          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_PYRCJ (Elongation factor 1-alpha OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tuf PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 70/137 (51.09%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    7 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLG++Q++   NKMDA    Y + RY+++  EVS  LK +GY+P K+ FVP
Sbjct:   66 FAWILDRFKEERERGVTIEATHVGFETQKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDAV--NYDQKRYEQVKAEVSKLLKLLGYDPSKIHFVP 200          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 70/137 (51.09%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    7 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FEA I   GQ REH  L  TLGV+Q++   NKMD     Y + RY+++  EVS  LK +GY+P K+ F+P
Sbjct:   66 FAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFEAAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDVV--NYDQKRYEQVKAEVSKLLKLLGYDPSKIHFIP 200          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAR (Elongation factor 1-alpha OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tuf PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 69/137 (50.36%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    7 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDF+KNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLG++Q++   NKMD     Y + RY+++  EVS  LK +GY+P K+ FVP
Sbjct:   66 FAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFVKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGIQQLVVAVNKMDVV--NYDQKRYEQVKSEVSKLLKLLGYDPSKIHFVP 200          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_PYRIL (Elongation factor 1-alpha OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tuf PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.944e-35
Identity = 71/137 (51.82%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    7 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            +AW+LD+ K ERERG+TI+     FET K + T+ID PGHRDFIKNMI G SQAD A+ +I +  G FE  I   GQ REH  L  TLGV+Q++   NKMD     Y + RY++I  EVS  LK +GY+P K+ F+P
Sbjct:   66 FAWILDRFKEERERGVTIEATHVGFETNKLFITIIDLPGHRDFIKNMIVGASQADAALFVISARPGEFETAIGPQGQGREHLFLIRTLGVQQIVVAVNKMDIV--NYDQKRYEQIKAEVSKLLKLLGYDPSKIHFIP 200          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.330e-35
Identity = 71/138 (51.45%), Postives = 94/138 (68.12%), Query Frame = 1
Query:    4 QYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            ++AWV+D LK ERERGITIDIA  KFET KY  TV+D PGHRDF+KNMITG SQAD A++++  T G  E       QT+EH  L+ TLG+ Q+I   NKMDA    YS+ +Y+E   +++  +  VG+ P + PF+P
Sbjct:   55 EFAWVMDSLKEERERGITIDIAHKKFETPKYNFTVVDCPGHRDFVKNMITGASQADAAIIVVSGTEGPME-------QTKEHVFLSKTLGINQIIVAINKMDAV--NYSEEKYNEAKDKMTKLIMSVGFKPAETPFIP 183          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 9.647e-35
Identity = 72/138 (52.17%), Postives = 92/138 (66.67%), Query Frame = 1
Query:    4 QYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            ++AWV+D+LK ERERG+TID+A  KF+T KYY T++D PGHRDFIKNMITG SQAD AVL++D              QTREH  LA TLG+ Q+I   NKMD     Y +  Y+   + VS  LK VGY  +++PF+P
Sbjct:   55 EFAWVMDRLKEERERGVTIDVAHRKFQTDKYYITIVDCPGHRDFIKNMITGASQADAAVLVMDVVE-------KVQPQTREHIFLARTLGINQIIVAINKMDRV--NYDQKEYEAAKEAVSKLLKMVGYKVDEIPFIP 183          
BLAST of FC931614 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34
Identity = 69/137 (50.36%), Postives = 93/137 (67.88%), Query Frame = 1
Query:    7 YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP 417
            YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P
Sbjct:  304 YAWVLDETGEERERGVTMDVGMTKFETTTKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIP 438          
The following BLAST results are available for this feature:
BLAST of FC931614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_UNCMA1.346e-3652.17Elongation factor 1-alpha OS=Uncultured methanogen... [more]
EF1A_METHJ2.296e-3654.01Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_METBU2.296e-3654.74Elongation factor 1-alpha OS=Methanococcoides burt... [more]
EF1A_PYRCJ8.725e-3651.09Elongation factor 1-alpha OS=Pyrobaculum calidifon... [more]
EF1A_PYRAE8.725e-3651.09Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_PYRAR1.488e-3550.36Elongation factor 1-alpha OS=Pyrobaculum arsenatic... [more]
EF1A_PYRIL1.944e-3551.82Elongation factor 1-alpha OS=Pyrobaculum islandicu... [more]
EF1A_METLZ4.330e-3551.45Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_ARCFU9.647e-3552.17Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
HBS1L_RAT1.260e-3450.36HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]

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Properties
Property NameValue
Genbank descriptionC34107B02EF PostHarvP1 Citrus clementina cDNA clone C34107B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931614 ID=FC931614; Name=FC931614; organism=Citrus clementina; type=EST; length=419bp
ATTCAATACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGG
TATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACT
GCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATT
ACCGGTACCTCACAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCAC
CGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATG
CTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAAC
AAGATGGACGCCACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAAT
TGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGA
AAGTCCCATTCGTGCCCAT
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