FC931620

Overview
NameFC931620
Unique NameFC931620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATB2_GIALA (Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 65/210 (30.95%), Postives = 93/210 (44.29%), Query Frame = 1
Query:   97 NDLPADFDWREK--GAVGPVKDQGSCGSCWSFSTTGALEGANFLA--TGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY---TGTDRGHA---CKFDKSKI-AASVANFSVVSLDEDQIAANLVKNGPLAVA--INAVYMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            +D+P  FD+RE+    +  V DQG CGSCW+FS+         +A    K V  S Q +V CDH          D  CNGG + + +++  K  G   +E  PY   + T RG     C    SK+  A+  ++    LD   +   L  +GPL VA  +++ +M  Y  GV           H V  VGYG+            YWII+
Sbjct:   73 DDVPESFDFREEYPHCIPEVVDQGGCGSCWAFSSVATFGDRRCVAGLDKKPVKYSPQYVVSCDHG---------DMACNGGWLPNVWKFLTKT-GTTTDECVPYKSGSTTLRGTCPTKCADGSSKVHLATATSYKDYGLDIPAMMKALSTSGPLQVAFLVHSDFMY-YESGVYQHTYGYMEGGHAVEMVGYGTDD------DGVDYWIIK 265          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.665e-11
Identity = 66/242 (27.27%), Postives = 107/242 (44.21%), Query Frame = 1
Query:    1 DLTPAEFRRTYL-------GLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKL-VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANL-VKNGPLAVAINAVYMQTYIGGVSCPYICS----RRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            D++  EF+  YL        L+++  L   A    I   N +P + D R  G V  +K+Q +CGSCW+FS    +E +N+L+   + + LSEQ+LVDC          +   GC G  + +   Y ++  G++ E+ YPY    R   C+   +K         +   + D+I   L  K   L+V I    + ++        + S    +R  H +  VGYGS        +   YWII+
Sbjct:   70 DMSLEEFKNQYLMSDQAYEALKKEFDLDAGAQACQIGAVN-IPNEIDLRALGYVTKIKNQVACGSCWAFSGVATVE-SNYLSYDNVSLDLSEQELVDC----------ASQHGCGGDTVLNGLRY-IQKNGVVEEQSYPYKA--REGRCQRPNAKRYGIKDLCQIYPPNGDKIRTYLATKQAALSVIIGIRDLDSFRHYDGRTILQSDNGGKRNFHAINIVGYGSK-------QGVRYWIIR 289          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: PEPT1_EURMA (Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 34/103 (33.01%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  103 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDR 411
            LP++ D R    V P++ QG CGSCW+FS   + E A        + L+EQ+LVDC          +  +GC+G  +    EY ++  G+++E  YPY   ++
Sbjct:  109 LPSELDLRSLRTVTPIRMQGGCGSCWAFSGVASTESAYLAYRNMSLDLAEQELVDC----------ASQNGCHGDTIPRGIEY-IQQNGVVQEHYYPYVAREQ 200          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATC_SCHMA (Cathepsin C OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 61/223 (27.35%), Postives = 91/223 (40.81%), Query Frame = 1
Query:   94 TNDLPADFDWRE-----KGAVGPVKDQGSCGSCWSFSTTGALEGANFLAT--GKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAG---GLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVV-----SLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            T +LP +FDW       +  V P+++QG CGSC++  +  ALE    L +   +   LS Q +VDC              GCNGG     F    K G   GL ++   PYTG D G  C   K+       ++S +     + +E  +   L+ NGP  V              +Y  T +      +      +H V  VGYG       +L  +PYW ++
Sbjct:  215 TGNLPLEFDWTSPPDGSRSPVTPIRNQGICGSCYASPSAAALEARIRLVSNFSEQPILSPQTVVDC---------SPYSEGCNGGF---PFLIAGKYGEDFGLPQKIVIPYTGEDTG-KCTVSKNCTRYYTTDYSYIGGYYGATNEKLMQLELISNGPFPVGFEVYEDFQFYKEGIYHHTTVQTDHYNFNPFELTNHAVLLVGYGVD-----KLSGEPYWKVK 419          
The following BLAST results are available for this feature:
BLAST of FC931620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CATB2_GIALA1.645e-1130.95Cathepsin B-like CP2 OS=Giardia lamblia GN=CP2 PE=... [more]
PEPT1_PSOOV3.665e-1127.27Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
PEPT1_EURMA6.252e-1133.01Peptidase 1 OS=Euroglyphus maynei GN=EURM1 PE=1 SV... [more]
CATC_SCHMA6.252e-1127.35Cathepsin C OS=Schistosoma mansoni PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34107B09EF PostHarvP1 Citrus clementina cDNA clone C34107B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931620 ID=FC931620; Name=FC931620; organism=Citrus clementina; type=EST; length=689bp
GACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGGAA
GCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAATG
ATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTT
AAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGC
CTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTG
AGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGT
TCTTGTGATTCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTA
CACACTCAAGGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCG
GCACTGATCGTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCC
TCAGTGGCCAACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGC
CAATCTTGTGAAAAATGGTCCCCTTGCAGTGGCCATCAATGCCGTGTACA
TGCAGACATACATTGGGGGAGTTTCCTGCCCATACATATGCTCGAGGCGA
TTGGACCATGGAGTGTTTTTCGTGGGATACGGTTCAGCTGGCTATGCTCC
AATCAGGTTGAAGGAGAAGCCATACTGGATCATCCAGAA
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