FC931620

Overview
NameFC931620
Unique NameFC931620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:426..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.407e-33
Identity = 78/200 (39.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:   97 NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHAC-KFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            + LP   DWREKG +  VKDQGSCGSCW+FS   A+E  N + TG L+SLSEQ+LVDCD         S + GC+GGLM+ AFE+ +K GG+  EEDYPY   +R   C ++ K+     + ++  V ++ ++     V + P+++A+ A     Q Y  G+     C   +DHGV   GYG+            YWI++
Sbjct:   16 DSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDR--------SYNEGCDGGLMDYAFEFVIKNGGIDTEEDYPY--KERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGK-CGTAVDHGVVIAGYGTE-------NGMDYWIVR 197          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 94/236 (39.83%), Postives = 119/236 (50.42%), Query Frame = 1
Query:    1 DLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRR---LDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            D++  EFR T LG  +        +         LP   DWRE G V PVK+QG CGSCW+FSTTGALE A   ATGK +SLSEQQLVDC    +       + GCNGGL + AFEY    GGL  EE YPY G +    CKF    +   V    N ++ + DE + A  LV+  P++VA   +   + Y  GV     C      ++H V  VGYG            PYW+I+
Sbjct:  109 DMSWEEFRATRLGAAQNCSATLTGNHRMRAAAVALPETKDWREDGIVSPVKNQGHCGSCWTFSTTGALEAAYTQATGKPISLSEQQLVDCGFAFN-------NFGCNGGLPSQAFEYIKYNGGLDTEESYPYQGVN--GICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVR--PVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVEDGV-------PYWLIK 326          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 98/245 (40.00%), Postives = 126/245 (51.43%), Query Frame = 1
Query:    1 DLTPAEFRRTYLGL-----RRKLRLPKDADQAPILPTNDLPA-DFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQ-IAAN-------LVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            D+T  EFR  Y G      R +  + K+           LPA   DWR KGAV  VKDQG CGSCW+FST  ++EG N + TG+LVSLSEQ+LVDCD         S + GCNGGLM+ AFE+ ++  G+  E+ YPY   D            A+++ N  VVS+D  Q + AN        V N P++V+I A     Q Y  GV     C   LDHGV  VGYG+            YWI++
Sbjct:   90 DMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCD--------TSYNEGCNGGLMDYAFEF-IQKNGITTEDSYPYAEQD---------GTCASNLLNSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGR-CGTELDHGVAIVGYGAT------RDGTKYWIVK 309          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 80/202 (39.60%), Postives = 111/202 (54.95%), Query Frame = 1
Query:   91 PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            P   LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVD    C  E+ G  + GCNGG M +AF+Y +   G+  +  YPY   D+   C++D    AA+ + ++ +    + +    V N GP++V ++A +     Y  GV     C++ ++HGV  VGYG        L  K YW+++
Sbjct:  111 PNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD-------LNGKEYWLVK 297          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.208e-32
Identity = 78/199 (39.20%), Postives = 108/199 (54.27%), Query Frame = 1
Query:   97 NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            +DLP   DWRE GAV PVK+QG CGSCW+FST  A+EG N + TG L+SLSEQQLVDC          + + GC GG MN AF++ +  GG+  EE YPY G D    C    +    S+ ++  V    +Q     V N P++V ++A     Q Y  G+     C+   +H +  VGYG+         +K +WI++
Sbjct:    1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT---------TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD--GICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG-SCNISANHALTVVGYGTE-------NDKDFWIVK 180          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 90/236 (38.14%), Postives = 124/236 (52.54%), Query Frame = 1
Query:    1 DLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVYMQT---YIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            D+TP E     +G    LR+P+  +++  L ++    LP   DWREKG V  VK QGSCGSCW+FS  GALEG   L TGKLVSLS Q LVDC  E   E+ G  + GC GG M  AF+Y +    +  E  YPY   D    C +D    AA+ + +  +   DE+ +   +   GP++V I+     +   Y  GV     C+  ++HGV  VGYG+       L  K YW+++
Sbjct:   80 DMTPEEV----IGYMGSLRIPRPWNRSGTLKSSSNQTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTE---EKYG--NKGCGGGFMTEAFQYIIDT-SIDSEASYPYKAMD--EKCLYDPKNRAATCSRYIELPFGDEEALKEAVATKGPVSVGIDDASHSSFFLYQSGVYDDPSCTENMNHGVLVVGYGT-------LDGKDYWLVK 296          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 80/202 (39.60%), Postives = 106/202 (52.48%), Query Frame = 1
Query:   91 PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            P   LP   DWREKG V  VK QG+CGSCW+FS  GALE    L TGKLVSLS Q LVDC            + GCNGG M  AF+Y +   G+  E  YPY   D    C++D    AA+ + +  +    ++     V N GP++V I+A +     Y  GV     C++ ++HGV  VGYG+       L  K YW+++
Sbjct:  111 PNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC------STAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAMD--GKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGN-------LDGKDYWLVK 297          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 78/201 (38.81%), Postives = 112/201 (55.72%), Query Frame = 1
Query:   91 PTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICS-RRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            P+   P  FDWR+   V  VK+QG CGSCW+F+  G +E    +    L+ LSEQQL+DCD           D GC+GGLM+ AF+  ++ GG+  E DYPY G +  +AC+   SK+A  +++     L DE ++   L KNGP+AVAI+ V +  Y  G++   +C+   L+H V  VGYG          + PYWI +
Sbjct:  122 PSARTPESFDWRKLNKVTKVKEQGVCGSCWAFAAIGNIESQYAIMHDSLIDLSEQQLLDCDR---------VDQGCDGGLMHLAFQEIIRIGGVEHEIDYPYQGIE--YACRLAPSKLAVRLSHCYQYDLRDERKLLELLYKNGPIAVAIDCVDIIDYRSGIAT--VCNDNGLNHAVLLVGYGIE-------NDTPYWIFK 302          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 85/205 (41.46%), Postives = 115/205 (56.10%), Query Frame = 1
Query:   94 TNDLPADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVA--INAVYMQTYIGGVSCPYICSR---RLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            T   P   DWR+KG  V PVK+QGSCGSCW+FSTTGALE A  +ATGKL  L+EQQLVDC    +       + GC GGL + AFEY     G+M E+ YPY G D    CK+  SK  A V + + ++L DE+ +   +  + P++ A  + A +M  Y  G+     C +   +++H V  VGYG         K  PYWI++
Sbjct:  113 TGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGD--CKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMM-YRKGIYSSTSCHKTPDKVNHAVLAVGYGEE-------KGIPYWIVK 300          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 81/204 (39.71%), Postives = 113/204 (55.39%), Query Frame = 1
Query:   94 TNDLPADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSR---RLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            T   P   DWR+KG  V PVK+QG+CGSCW+FSTTGALE A  +ATGK++SL+EQQLVDC  + +       + GC GGL + AFEY L   G+M E+ YPY G D G+ CKF   K    V + + +++ DE+ +   +    P++ A         Y  G+     C +   +++H V  VGYG            PYWI++
Sbjct:  113 TGPYPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFN-------NHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKD-GY-CKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDKVNHAVLAVGYGEKNGI-------PYWIVK 300          
The following BLAST results are available for this feature:
BLAST of FC931620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CYSPL_SOLLC3.407e-3339.00Low-temperature-induced cysteine proteinase (Fragm... [more]
CYSP2_MAIZE5.811e-3339.83Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CYSP_HEMSP1.295e-3240.00Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CATS_HUMAN1.691e-3239.60Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CPGP2_ZINOF2.208e-3239.20Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATS_RAT2.884e-3238.14Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATS_BOVIN6.425e-3239.60Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATV_NPVST8.391e-3238.81Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATH_BOVIN1.869e-3141.46Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATH_HUMAN3.188e-3139.71Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]

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Properties
Property NameValue
Genbank descriptionC34107B09EF PostHarvP1 Citrus clementina cDNA clone C34107B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931620 ID=FC931620; Name=FC931620; organism=Citrus clementina; type=EST; length=689bp
GACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGGAA
GCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAATG
ATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTT
AAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGC
CTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTG
AGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGT
TCTTGTGATTCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTA
CACACTCAAGGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCG
GCACTGATCGTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCC
TCAGTGGCCAACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGC
CAATCTTGTGAAAAATGGTCCCCTTGCAGTGGCCATCAATGCCGTGTACA
TGCAGACATACATTGGGGGAGTTTCCTGCCCATACATATGCTCGAGGCGA
TTGGACCATGGAGTGTTTTTCGTGGGATACGGTTCAGCTGGCTATGCTCC
AATCAGGTTGAAGGAGAAGCCATACTGGATCATCCAGAA
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