FC931620

Overview
NameFC931620
Unique NameFC931620
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 81/205 (39.51%), Postives = 111/205 (54.15%), Query Frame = 1
Query:   94 TNDLPADFDWREKGA-VGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINA-----VYMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            T   P   DWR+KG  V PVK+QGSCGSCW+FSTTGALE A  +ATGK++SL+EQQLVDC    +       + GC GGL + AFEY     G+M E+ YPY G D    CKF   K  A V + + +++ DE+ +   +    P++ A        +Y +      SC +    +++H V  VGYG            PYWI++
Sbjct:  113 TGPYPPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD--DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSC-HKTPDKVNHAVLAVGYGEENGI-------PYWIVK 300          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 87/234 (37.18%), Postives = 119/234 (50.85%), Query Frame = 1
Query:    1 DLTPAEFRRTYLGLRRKL--RLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSR-RLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            DLT  EF +   G RR+   R+    D   +     +P   DWR  G V PVK+QG C S W+FS TG+LEG  F  TG+LV LSEQ L+DC          +    C+GG M +AF+Y    GGL  EE YPY G   G  C++     AA+V +F  +   E+ +   + K GP++VA++A +   Q Y  G+     C R  L+H V  VGYG  G          YW+++
Sbjct:   82 DLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLY----VPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDC-------MGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPYIGP--GRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGE---ESDGNSYWLVK 299          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 96/236 (40.68%), Postives = 120/236 (50.85%), Query Frame = 1
Query:    1 DLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICS---RRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            DLT  EFR+  LG  +        +    L    LP   DWR+ G V PVK QG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + GCNGGL + AFEY    GGL  EE YPYTG  +   CKF ++ I   V    N ++ +  E + A  LV+  P++VA   V   + Y  GV     C      ++H V  VGYG            PYW+I+
Sbjct:  107 DLTWDEFRKHKLGASQNCSATTKGNLK--LTNVVLPETKDWRKDGIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGAFN-------NFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTG--KNGICKFSQANIGVKVISSVNITLGAEYELKYAVALVR--PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVE-------NGTPYWLIK 322          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 83/218 (38.07%), Postives = 114/218 (52.29%), Query Frame = 1
Query:    1 DLTPAEFRRTYLGLRR-KLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSR-RLDHGVFFVGYGSAG 642
            DLT  EF +   G +R K++          L    +P   DWR+ G V PVK+QG C S W+FS TG+LEG  F  T +L+ LSEQ L+DC          +   GC+GG M  AF+Y    GGL  EE YPY G  +G  C++     AA+V +F  +   E+ +   + K GP++VA++A +   Q Y  G+     C R  L+H V  VGYG  G
Sbjct:   82 DLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLY---VPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDC-------MGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRG--QGRECRYHAENSAANVRDFVQIPGSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLNHAVLVVGYGFEG 287          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 86/202 (42.57%), Postives = 108/202 (53.47%), Query Frame = 1
Query:  103 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRR---LDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            LP   DWRE G V PVKDQG CGSCW+FSTTG+LE A   ATGK VSLSEQQLVDC    +       + GC+GGL + AFEY    GGL  EE YPYTG +    C +    +   V    N ++ + DE + A  LV+  P++VA   +   + Y  GV     C      ++H V  VGYG            PYW+I+
Sbjct:  145 LPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATAYN-------NFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTGVN--GICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGV-------PYWLIK 328          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 79/231 (34.20%), Postives = 122/231 (52.81%), Query Frame = 1
Query:    1 DLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            DL+  E    Y GL   L+     +   +  P +  P +FDWR    V  VK+QG CG+CW+F+T  +LE    +   +L++LSEQQL+DCD+          D+GCNGGL+++A+E  ++ GG+  E DYPY G+D    C+ D +K    V   +  +++ E+++   L   GP+ VAI+A  +  Y  G+   Y  +   +H V  VGYG            PYWI++
Sbjct:   78 DLSKDETISKYTGLALPLQTQNFCEVVVLNRPPDKGPLEFDWRRLNKVTSVKNQGICGACWAFATLASLESQFAIKHNQLINLSEQQLIDCDY---------VDAGCNGGLLHTAYEAVMQMGGVQAENDYPYEGSDGN--CRVDVAKFVVKVKKCYRYIAVFEEKLKDLLRIVGPIPVAIDASDIVNYRRGI-MRYCSNYGFNHAVLLVGYGVE-------NNVPYWILK 289          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.067e-30
Identity = 75/195 (38.46%), Postives = 105/195 (53.85%), Query Frame = 1
Query:  106 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            P  FDWR    +  VKDQG CG+CW F++ GALE    +   +L+ LSEQQLVDCD           D GC+GGL+++A+E  +K GG+ +E DY Y        C     K A  V N +  V L+E+++   L   GP+A+A++AV +  Y GG+   +  +  L+H V  VGYG            PYWII+
Sbjct:  127 PVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKA--ERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVDAVDLTDYYGGI-VSFCENNGLNHAVLLVGYGVE-------NNVPYWIIK 302          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.699e-30
Identity = 77/186 (41.40%), Postives = 105/186 (56.45%), Query Frame = 1
Query:   94 TNDLPADFDWREKG-AVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSR---RLDHGVFFVGYG 633
            T   P+  DWR+KG  V PVK+QG+CGSCW+FSTTGALE A  +A+GK+++L+EQQLVDC    +       + GC GGL + AFEY L   G+M E+ YPY G  +   CKF+  K  A V N   ++L DE  +   +    P++ A         Y  GV     C +   +++H V  VGYG
Sbjct:  111 TGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYILYNKGIMGEDSYPYIG--KNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYG 287          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.525e-30
Identity = 77/186 (41.40%), Postives = 105/186 (56.45%), Query Frame = 1
Query:   94 TNDLPADFDWREKG-AVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSR---RLDHGVFFVGYG 633
            T   P+  DWR+KG  V PVK+QG+C SCW+FSTTGALE A  +A+GK++SL+EQQLVDC    +       + GC GGL + AFEY L   G+M E+ YPY G D   +C+F+  K  A V N   ++L DE  +   +    P++ A         Y  GV     C +   +++H V  VGYG
Sbjct:  111 TGPYPSSMDWRKKGNVVSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFN-------NHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKD--SSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYG 287          
BLAST of FC931620 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 76/195 (38.97%), Postives = 105/195 (53.85%), Query Frame = 1
Query:  106 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVFFVGYGSAGYAPIRLKEKPYWIIQ 687
            PA+FDWR    V  VKDQG CG+CW+F+  GALE    +   +L+ L+EQQLVDCD           D GC+GGL+++A+E  +  GG+ +E DYPY        C     K A  V N +  V L E+++   L   GP+A+A++AV +  Y GGV   +  +  L+H V  VGYG            PYW I+
Sbjct:  127 PANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCDF---------VDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYKAVRL--PCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGV-ISFCENNGLNHAVLLVGYGIE-------NNVPYWTIK 302          
The following BLAST results are available for this feature:
BLAST of FC931620 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 164
Match NameE-valueIdentityDescription
CATH_PIG4.164e-3139.51Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
TEST2_MOUSE7.103e-3137.18Testin-2 OS=Mus musculus PE=2 SV=1[more]
CYSP3_SOLLC7.103e-3140.68Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
TEST2_RAT1.582e-3038.07Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
ORYC_ORYSJ1.582e-3042.57Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATV_NPVHC1.582e-3034.20Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATV_NPVSE2.067e-3038.46Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATH_RAT2.699e-3041.40Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_MOUSE3.525e-3041.40Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CATV_NPVMC4.604e-3038.97Viral cathepsin OS=Mamestra configurata nucleopoly... [more]

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Properties
Property NameValue
Genbank descriptionC34107B09EF PostHarvP1 Citrus clementina cDNA clone C34107B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931620 ID=FC931620; Name=FC931620; organism=Citrus clementina; type=EST; length=689bp
GACTTGACTCCGGCCGAGTTCCGCCGGACGTACCTTGGCCTCAGGAGGAA
GCTGAGGCTGCCTAAGGATGCGGATCAGGCGCCGATCTTGCCTACGAATG
ATTTGCCGGCGGATTTTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTT
AAAGATCAGGGTTCATGCGGATCATGCTGGAGTTTCAGTACAACAGGGGC
CTTGGAAGGTGCTAACTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTG
AGCAACAGCTTGTGGATTGCGATCATGAGTGTGATCCTGAGGAACCAGGT
TCTTGTGATTCTGGATGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTA
CACACTCAAGGCTGGTGGGCTTATGCGGGAGGAAGACTATCCTTACACCG
GCACTGATCGTGGCCACGCCTGCAAATTCGATAAGAGTAAGATTGCTGCC
TCAGTGGCCAACTTCAGTGTTGTCTCCCTTGATGAGGATCAAATTGCTGC
CAATCTTGTGAAAAATGGTCCCCTTGCAGTGGCCATCAATGCCGTGTACA
TGCAGACATACATTGGGGGAGTTTCCTGCCCATACATATGCTCGAGGCGA
TTGGACCATGGAGTGTTTTTCGTGGGATACGGTTCAGCTGGCTATGCTCC
AATCAGGTTGAAGGAGAAGCCATACTGGATCATCCAGAA
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