FC931621 | Citrus Genome Database

Overview


Name	FC931621
Unique Name	FC931621
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	715

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SHIF8 (Gamma-glutamyl phosphate reductase OS=Shigella flexneri serotype 5b (strain 8401) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SHIBS (Gamma-glutamyl phosphate reductase OS=Shigella boydii serotype 4 (strain Sb227) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SHIB3 (Gamma-glutamyl phosphate reductase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_ECOSM (Gamma-glutamyl phosphate reductase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_ECOLU (Gamma-glutamyl phosphate reductase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_ECOLI (Gamma-glutamyl phosphate reductase OS=Escherichia coli (strain K12) GN=proA PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_ECOLC (Gamma-glutamyl phosphate reductase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_ECODH (Gamma-glutamyl phosphate reductase OS=Escherichia coli (strain K12 / DH10B) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_ECOBW (Gamma-glutamyl phosphate reductase OS=Escherichia coli (strain K12 / BW2952) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_ECO5E (Gamma-glutamyl phosphate reductase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=proA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+++S +L  L S+++ ++L  +AD LEA   +I   N  DVA A+  G +++++ RLAL P ++  +A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSGLRLERRRV 110

HSP 2 Score: 29.6462 bits (65), Expect = 9.282e-17
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVIGVIYEARPNVTVDVASL 132

The following BLAST results are available for this feature:

BLAST of FC931621 vs. ExPASy Swiss-Prot

BLAST of FC931621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226


Match Name	E-value	Identity	Description
PROA_SHIF8	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Shigella fle...	[more]
PROA_SHIBS	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Shigella boy...	[more]
PROA_SHIB3	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Shigella boy...	[more]
PROA_ECOSM	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Escherichia ...	[more]
PROA_ECOLU	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Escherichia ...	[more]
PROA_ECOLI	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Escherichia ...	[more]
PROA_ECOLC	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Escherichia ...	[more]
PROA_ECODH	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Escherichia ...	[more]
PROA_ECOBW	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Escherichia ...	[more]
PROA_ECO5E	9.282e-17	33.64	Gamma-glutamyl phosphate reductase OS=Escherichia ...	[more]

Pages

Properties


Property Name	Value
Genbank description	C34107B10EF PostHarvP1 Citrus clementina cDNA clone C34107B10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931621 ID=FC931621; Name=FC931621; organism=Citrus clementina; type=EST; length=715bp
CTAAAAGCTGATCTTCTTGTTCTGTTGAGTGATGTAGAGGGCCTCTATAG
TGGTCCTCCAAGTGAGCCAAATTCGAAGCTGATCCATACATATATAAGAG
CAAAACACCAAGCAGAAATAACATTTGGAGACAAGTCAAGGGTTGGAAGA
GGGGGAATGACTGCTAAGGTCAATGCAGCTTATTGTGCAGCTTGCGCCGG
TATCCCTGTTGTTATTACTAGTGGCTTTGCCATGGACAGCATCATAAAGG
TACTTGAAGGAAAGCGTGTTGGGACTCTCTTTCATAGAGATGCACATTTG
TGGGTAAAACAAGTTGGGGCCCGTGAGATGGCAGTTGCAGCACGAGAAAG
TTCTAGACGGCTTCAGGCTCTACAATCTCAAGATAGGAGGAAAATTTTGC
TCGACGTAGCTGATGCCTTAGAGGCAAATGAAAGCTTGATTAAGGTTGAG
AATGAAGCCGATGTAGCTGCTGCACAGGAAGCTGGATATGCGAAATCACT
AGTATCACGTTTGGCACTGAAGCCTGGGAAGATCTCTAGCCTTGCAAAAT
CTATTCGTATACTTGCAGACATGGAAGAACCCATTGGTCAAATTTTAAAG
AGAACAGAGCTTGCGGATGGACTCATCCTGGAGAAACATCATGTCCTTTG
GGCGTCCTCTTGATAGTATTTGAATCTCGACCTGATGCCCTGGTCCAGAT
AGCTTCATTGGCCAT