FC931621 | Citrus Genome Database

Overview


Name	FC931621
Unique Name	FC931621
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	715

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig11037	contig	Ccv1_Contig11037:609..1324.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SALTY (Gamma-glutamyl phosphate reductase OS=Salmonella typhimurium GN=proA PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.992e-15
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+ +S +L  L S ++ ++L  +AD LEA    I   N  DV  A+  G +++++ RLAL P ++ ++A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILSANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 7.992e-15
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVVGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SALPK (Gamma-glutamyl phosphate reductase OS=Salmonella paratyphi A (strain AKU_12601) GN=proA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.992e-15
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+ +S +L  L S ++ ++L  +AD LEA    I   N  DV  A+  G +++++ RLAL P ++ ++A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILSANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 7.992e-15
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVVGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SALPC (Gamma-glutamyl phosphate reductase OS=Salmonella paratyphi C (strain RKS4594) GN=proA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.992e-15
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+ +S +L  L S ++ ++L  +AD LEA    I   N  DV  A+  G +++++ RLAL P ++ ++A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILSANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 7.992e-15
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVVGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SALPA (Gamma-glutamyl phosphate reductase OS=Salmonella paratyphi A GN=proA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.992e-15
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+ +S +L  L S ++ ++L  +AD LEA    I   N  DV  A+  G +++++ RLAL P ++ ++A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILSANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 7.992e-15
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVVGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SALHS (Gamma-glutamyl phosphate reductase OS=Salmonella heidelberg (strain SL476) GN=proA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.992e-15
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+ +S +L  L S ++ ++L  +AD LEA    I   N  DV  A+  G +++++ RLAL P ++ ++A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILSANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 7.992e-15
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVVGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SALCH (Gamma-glutamyl phosphate reductase OS=Salmonella choleraesuis GN=proA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.992e-15
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+ +S +L  L S ++ ++L  +AD LEA    I   N  DV  A+  G +++++ RLAL P ++ ++A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILSANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 7.992e-15
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVVGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SALPB (Gamma-glutamyl phosphate reductase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=proA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.994e-15
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+ +S +L  L S ++ ++L  +AD LEA    I   N  DV  A+  G +++++ RLAL P ++ ++A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILSANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 7.994e-15
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVVGVIYEARPNVTVDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_NATPD (Gamma-glutamyl phosphate reductase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=proA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.037e-14
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1

Query:  337 AARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE---AG-YAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEK 636
            AA+ ++  L     + R++ L  +ADA++   + +   NE DV AA+E   AG Y+++LV RL L   K+ S+ + +R +A  E+P+G+ L   EL DGL L K
Sbjct:   11 AAQTAALELANESDEARQENLQAIADAIDERRAEVLEANEKDVEAAEEMLEAGEYSQALVDRLKLSDAKLDSIIEMVRSVAGQEDPLGKTLTARELDDGLDLYK 114

HSP 2 Score: 38.5058 bits (88), Expect = 1.037e-14
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 3

Query:  633 ETSCPLGVLLIVFESRPDALVQIASLA 713
            + S P+GV+  VFESRPDALVQIA+L+
Sbjct:  114 KVSVPIGVIGTVFESRPDALVQIAALS 140

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SERP5 (Gamma-glutamyl phosphate reductase OS=Serratia proteamaculans (strain 568) GN=proA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.038e-14
Identity = 34/107 (31.78%), Postives = 65/107 (60.75%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M  AA+++S +L  L +  + ++L  +AD LEA   +I   NE D+  A+ +G +++L+ RL L P +++++A  +R +  + +P+G +L  + L  GL LE+  V
Sbjct:    4 QMGKAAKQASWQLAVLSTAKKNQVLSVIADKLEAESEVILQANEQDMEQARASGMSEALLDRLLLTPARLAAIANDVRQVCRLNDPVGHVLDGSLLDSGLKLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 1.038e-14
Identity = 10/22 (45.45%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  + +ASL
Sbjct:  111 PLGVIGVIYEARPNVTIDVASL 132

BLAST of FC931621 vs. ExPASy Swiss-Prot
Match: PROA_SALSV (Gamma-glutamyl phosphate reductase OS=Salmonella schwarzengrund (strain CVM19633) GN=proA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.038e-14
Identity = 35/107 (32.71%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  325 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKHHV 645
            +M +AA+ +S +L  L S ++ ++L  +AD LEA    I   N  DV  A+  G +++++ RLAL P ++ ++A  +R + ++ +P+GQ++    L  GL LE+  V
Sbjct:    4 QMGIAAKAASYKLALLSSCEKNRVLEKIADELEAQMESILSANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSGLRLERRRV 110

HSP 2 Score: 29.261 bits (64), Expect = 1.038e-14
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 3

Query:  645 PLGVLLIVFESRPDALVQIASL 710
            PLGV+ +++E+RP+  V +ASL
Sbjct:  111 PLGVVGVIYEARPNVTVDVASL 132

The following BLAST results are available for this feature:

BLAST of FC931621 vs. ExPASy Swiss-Prot

BLAST of FC931621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226


Match Name	E-value	Identity	Description
PROA_SALTY	7.992e-15	32.71	Gamma-glutamyl phosphate reductase OS=Salmonella t...	[more]
PROA_SALPK	7.992e-15	32.71	Gamma-glutamyl phosphate reductase OS=Salmonella p...	[more]
PROA_SALPC	7.992e-15	32.71	Gamma-glutamyl phosphate reductase OS=Salmonella p...	[more]
PROA_SALPA	7.992e-15	32.71	Gamma-glutamyl phosphate reductase OS=Salmonella p...	[more]
PROA_SALHS	7.992e-15	32.71	Gamma-glutamyl phosphate reductase OS=Salmonella h...	[more]
PROA_SALCH	7.992e-15	32.71	Gamma-glutamyl phosphate reductase OS=Salmonella c...	[more]
PROA_SALPB	7.994e-15	32.71	Gamma-glutamyl phosphate reductase OS=Salmonella p...	[more]
PROA_NATPD	1.037e-14	36.54	Gamma-glutamyl phosphate reductase OS=Natronomonas...	[more]
PROA_SERP5	1.038e-14	31.78	Gamma-glutamyl phosphate reductase OS=Serratia pro...	[more]
PROA_SALSV	1.038e-14	32.71	Gamma-glutamyl phosphate reductase OS=Salmonella s...	[more]

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Properties


Property Name	Value
Genbank description	C34107B10EF PostHarvP1 Citrus clementina cDNA clone C34107B10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931621 ID=FC931621; Name=FC931621; organism=Citrus clementina; type=EST; length=715bp
CTAAAAGCTGATCTTCTTGTTCTGTTGAGTGATGTAGAGGGCCTCTATAG
TGGTCCTCCAAGTGAGCCAAATTCGAAGCTGATCCATACATATATAAGAG
CAAAACACCAAGCAGAAATAACATTTGGAGACAAGTCAAGGGTTGGAAGA
GGGGGAATGACTGCTAAGGTCAATGCAGCTTATTGTGCAGCTTGCGCCGG
TATCCCTGTTGTTATTACTAGTGGCTTTGCCATGGACAGCATCATAAAGG
TACTTGAAGGAAAGCGTGTTGGGACTCTCTTTCATAGAGATGCACATTTG
TGGGTAAAACAAGTTGGGGCCCGTGAGATGGCAGTTGCAGCACGAGAAAG
TTCTAGACGGCTTCAGGCTCTACAATCTCAAGATAGGAGGAAAATTTTGC
TCGACGTAGCTGATGCCTTAGAGGCAAATGAAAGCTTGATTAAGGTTGAG
AATGAAGCCGATGTAGCTGCTGCACAGGAAGCTGGATATGCGAAATCACT
AGTATCACGTTTGGCACTGAAGCCTGGGAAGATCTCTAGCCTTGCAAAAT
CTATTCGTATACTTGCAGACATGGAAGAACCCATTGGTCAAATTTTAAAG
AGAACAGAGCTTGCGGATGGACTCATCCTGGAGAAACATCATGTCCTTTG
GGCGTCCTCTTGATAGTATTTGAATCTCGACCTGATGCCCTGGTCCAGAT
AGCTTCATTGGCCAT