FC931623

Overview
NameFC931623
Unique NameFC931623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.077e-28
Identity = 77/229 (33.62%), Postives = 117/229 (51.09%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSAR 703
            F+E+L   +   E    W+ GTADAV Q I+      ++    VLILSGDH+Y+M+Y   +++H D+ AD+T++ + +D      +G++ +D    +  F EKPK  +L+           S  D  K    ASMG+Y+F TDVL+ +L       N   DFG  I+P  V ++ + +F F D       YW D+GT+ +++ ANL L      F  YD   P  T  R
Sbjct:   83 FIEILPPMKRVSE---NWYMGTADAVYQNIY---SIGSEQPRYVLILSGDHIYKMNYDLMMRQHKDSGADVTLATILIDPSETRHFGVVDVDNQSHVNGFVEKPKSTELR-----------SPYDPSKVS--ASMGIYIFNTDVLIPVLLKDAEDPNSKHDFGHNILPKMVGEYKIYSFNFIDENKKEALYWRDVGTLDAYYDANLDLVSVAPVFNLYDKAWPIRTHQR 292          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SALDC (Glucose-1-phosphate adenylyltransferase OS=Salmonella dublin (strain CT_02021853) GN=glgC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 81/231 (35.06%), Postives = 119/231 (51.52%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP-DAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            FV++L A Q     G+ W++GTADAV Q + +    K    E V+IL+GDH+Y+ DY+  L  H++  A  TV C+P+    A+ +G+M +D S +II F EKP  P              +MP DA K   +ASMG+Y+F  D L  LL +       S+DFG +IIP   ++    A  F             YW D+GT+++++ ANL L     + + YD   P  T
Sbjct:   98 FVDLLPAQQRM--KGENWYRGTADAVTQNLDIIRRYK---AEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVVCMPVPIKEATAFGVMAVDESDKIIDFVEKPANPP-------------AMPGDASK--SLASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRT 308          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_ERWCT (Glucose-1-phosphate adenylyltransferase OS=Erwinia carotovora subsp. atroseptica GN=glgC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 77/237 (32.49%), Postives = 123/237 (51.90%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            FV++L A Q    +   W++GTADAV Q + +    +    E ++IL+GDH+Y+MDY+  L  H++  A+ TV+C+P+    AS +G+M +D+  +I+ FAEKP  P               MPD      +ASMG+Y+F  D L  LL   R++   ++DFG ++IP  V      A  F           + YW D+GT+++++ ANL L     + + YD   P  ++     P
Sbjct:   98 FVDLLPAQQR--YSTDHWYRGTADAVCQNLDII---RRYRAEYMVILAGDHIYKMDYSRMLIDHVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKPDNP-------------TPMPDNPDMA-LASMGIYVFNADYLYQLLETDRNASDSAHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDEHQYWRDVGTLEAYWRANLDLASVTPELDVYDRHWPIRSAIESLPP 315          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC2_VIBPA (Glucose-1-phosphate adenylyltransferase 2 OS=Vibrio parahaemolyticus GN=glgC2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.055e-27
Identity = 74/218 (33.94%), Postives = 112/218 (51.38%), Query Frame = 2
Query:   53 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL---SNDFGSEIIPASVKDHNVQAFLF---------NDYWEDIGTIKSFFYANLALTEQPAKFEFY 670
            E + A       G  W++GTADA+   +W+       + + V++LSGDH+YRMDY   L++H +  A +TV+C+ +    AS +G+M I  +G +  F EKP+ P              ++PD      +ASMG+Y+F  DVL   L     L   S+DFG++IIP  +   +V A+ F         + YW D+GTI SF+ AN+ L E       Y
Sbjct:   81 EYITAVPPQMRKGGAWYEGTADAIYHNLWLLS---RNDAKYVVVLSGDHIYRMDYAAMLEEHKEKGAKLTVACMDVPVKDASAFGVMGIAENGLVKSFVEKPENPP-------------TLPDD-NAKSLASMGIYIFDMDVLKEALTEDAKLETSSHDFGNDIIPKLIDTESVYAYKFCGSKGRVDKDCYWRDVGTIDSFYEANMDLLEPVPPMNLY 281          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_THESQ (Glucose-1-phosphate adenylyltransferase OS=Thermotoga sp. (strain RQ2) GN=glgC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 75/223 (33.63%), Postives = 119/223 (53.36%), Query Frame = 2
Query:   41 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDH--NVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            DG VE+L      G     W++GTA+AV Q +   E+    + E VLILSGDH+Y M+Y + +  H+  +AD T++C+ +    AS +G+M  D  G+I+ F EKP  P                        +AS+G+Y+F  + L  +L    +    S+DFG ++IP  ++++  ++ AF F+ YW D+GT++S++ ANL L      F  YDP   F+T
Sbjct:   80 DGGVEILPPYV--GRHESDWYKGTANAVYQNLEFLEE---NDAELVLILSGDHVYAMNYNDLIDYHLLKEADGTIACMEVPIEEASRFGIMITDVDGRIVDFEEKPAKPRSN---------------------LASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSYWEANLELVLPVPPFNLYDPNWRFFT 276          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_THEMA (Glucose-1-phosphate adenylyltransferase OS=Thermotoga maritima GN=glgC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 75/223 (33.63%), Postives = 119/223 (53.36%), Query Frame = 2
Query:   41 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDH--NVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            DG VE+L      G     W++GTA+AV Q +   E+    + E VLILSGDH+Y M+Y + +  H+  +AD T++C+ +    AS +G+M  D  G+I+ F EKP  P                        +AS+G+Y+F  + L  +L    +    S+DFG ++IP  ++++  ++ AF F+ YW D+GT++S++ ANL L      F  YDP   F+T
Sbjct:   80 DGGVEILPPYV--GRHESDWYKGTANAVYQNLEFLEE---NDAELVLILSGDHVYAMNYNDLIDYHLLKEADGTIACMEVPIEEASRFGIMITDVDGRIVDFEEKPAKPRSN---------------------LASLGIYVFNYEFLKKVLIEDENDPNSSHDFGKDVIPRILRENLGSLYAFRFDGYWRDVGTLRSYWEANLELVLPVPPFNLYDPNWRFFT 276          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SALTI (Glucose-1-phosphate adenylyltransferase OS=Salmonella typhi GN=glgC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.378e-27
Identity = 80/231 (34.63%), Postives = 120/231 (51.95%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP-DAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            FV++L A Q     G+ W++GTADAV Q + +    K    E V+IL+GDH+Y+ DY+  L  H++  A  TV+C+P+    A+ +G+M +D + +II F EKP  P              +MP DA K   +ASMG+Y+F  D L  LL +       S+DFG +IIP   ++    A  F             YW D+GT+++++ ANL L     + + YD   P  T
Sbjct:   98 FVDLLPAQQRM--KGENWYRGTADAVTQNLDIIRCYK---AEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIKEATAFGVMAVDENDKIIDFVEKPANPP-------------AMPGDASK--SLASMGIYVFDADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRDVGTLEAYWKANLDLASVTPELDMYDQNWPIRT 308          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_THENN (Glucose-1-phosphate adenylyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glgC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 76/230 (33.04%), Postives = 121/230 (52.61%), Query Frame = 2
Query:   41 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDH--NVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            DG VE+L       E+   W++GTA+AV Q +   E+    + E VL+LSGDH+Y M+Y + +  H+   AD T++C+ +    AS +G+M  D  G+I+ F EKP  P                        +AS+G+Y+F  + L  +L    +    S+DFG ++IP  ++++  ++ AF F+ YW D+GTI+S++ ANL L      F  YDP   F+T +    P
Sbjct:   80 DGGVEILPPYVGRNESD--WYKGTANAVYQNLEFLEE---NDAELVLVLSGDHVYAMNYNDLIDYHLLKGADGTIACMEVPLEEASRFGIMITDVEGRIVDFEEKPPKPRSN---------------------LASLGIYVFNYEFLKRVLIEDENDPNSSHDFGKDVIPKILRENKGSLYAFRFDGYWRDVGTIRSYWEANLELVLPVPPFNLYDPNWRFFTHSEEMPP 283          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SHIBS (Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 79/230 (34.35%), Postives = 117/230 (50.87%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            FV++L A Q     G+ W++GTADAV Q + +    K    E V+IL+GDH+Y+ DY+  L  H++  A  TV+C+P+    AS +G+M +D + +II+F EKP  P              SMP+      +ASMG+Y+F  D L  LL         S+DFG ++IP   +     A  F             YW D+GT+K+++ ANL L     + + YD   P  T
Sbjct:   98 FVDLLPAQQRM--KGENWYRGTADAVTQNLDIIRRYK---AEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-------------SMPNDPS-KSLASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRDVGTLKAYWKANLDLASVVPELDMYDRNWPIRT 308          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SHIB3 (Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glgC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.350e-27
Identity = 79/230 (34.35%), Postives = 117/230 (50.87%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            FV++L A Q     G+ W++GTADAV Q + +    K    E V+IL+GDH+Y+ DY+  L  H++  A  TV+C+P+    AS +G+M +D + +II+F EKP  P              SMP+      +ASMG+Y+F  D L  LL         S+DFG ++IP   +     A  F             YW D+GT+K+++ ANL L     + + YD   P  T
Sbjct:   98 FVDLLPAQQRM--KGENWYRGTADAVTQNLDIIRRYK---AEYVVILAGDHIYKQDYSRMLIDHVEKGARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPP-------------SMPNDPS-KSLASMGIYVFDADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRDVGTLKAYWKANLDLASVVPELDMYDRNWPIRT 308          
The following BLAST results are available for this feature:
BLAST of FC931623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC_ACIBL8.077e-2833.62Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]
GLGC_SALDC1.055e-2735.06Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_ERWCT1.055e-2732.49Glucose-1-phosphate adenylyltransferase OS=Erwinia... [more]
GLGC2_VIBPA1.055e-2733.94Glucose-1-phosphate adenylyltransferase 2 OS=Vibri... [more]
GLGC_THESQ1.378e-2733.63Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_THEMA1.378e-2733.63Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_SALTI1.378e-2734.63Glucose-1-phosphate adenylyltransferase OS=Salmone... [more]
GLGC_THENN2.350e-2733.04Glucose-1-phosphate adenylyltransferase OS=Thermot... [more]
GLGC_SHIBS2.350e-2734.35Glucose-1-phosphate adenylyltransferase OS=Shigell... [more]
GLGC_SHIB32.350e-2734.35Glucose-1-phosphate adenylyltransferase OS=Shigell... [more]

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Properties
Property NameValue
Genbank descriptionC34107C01EF PostHarvP1 Citrus clementina cDNA clone C34107C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931623 ID=FC931623; Name=FC931623; organism=Citrus clementina; type=EST; length=729bp
GGCGCGGTCGTATAATCTTGGAAATGGTGTGAATTTTGGGGATGGGTTTG
TAGAGGTTCTGGCTGCTACTCAAACTCCTGGAGAAGCAGGAAAGAAGTGG
TTCCAAGGGACAGCAGATGCTGTGAGGCAATTTATATGGGTCTTTGAGGA
CGCCAAGAATAAGAATGTGGAGAATGTTTTGATCTTGTCTGGTGATCACC
TTTACCGGATGGACTATACAGAGTTTCTGCAGAAGCATATCGACACAAAA
GCTGATATTACAGTCTCATGTGTACCAATGGATGACTGCCGTGCATCAGA
TTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCATCCAATTTGCTG
AGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTGATACTACTCTT
CTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTACATTGCATCAAT
GGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCTCTTGAGATCTA
GCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTCCAGCTTCTGTG
AAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTACTGGGAGGACAT
TGGAACAATAAAGTCCTTTTTTTATGCCAATTTGGCCCTCACAGAACAGC
CTGCGAAGTTTGAATTTTATGATCCCAAGACACCTTTCTATACGTCTGCT
AGATTCTGCCACCCACTAAGTGATCGATG
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