FC931623

Overview
NameFC931623
Unique NameFC931623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP7 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glgC PE=3 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 2.101e-68
Identity = 133/239 (55.65%), Postives = 172/239 (71.97%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQP-AKFEFYDPKTPFYTSARFCHP 715
            +R+YN      F D FVEVLAA QT       WFQGTADAVRQ++W+ E+    +V+  LILSGDHLYRMDY E++Q+H +TKADIT+S VP+D+ RAS +GLMKID + +++ F+EKPKG  L+ MQ DT++LGLS   A K PYIASMG+Y+F  +VL  LLR + P   DFG EIIP +  D+N+QA+L+  YWEDIGTI++F+ +NLALT+QP   F FYD K P YT  R+  P
Sbjct:   69 SRTYNF---TGFNDEFVEVLAAQQTA--ENPSWFQGTADAVRQYLWLMEEW---DVDEYLILSGDHLYRMDYREYIQRHRETKADITLSVVPIDEKRASSFGLMKIDDNARVVDFSEKPKGEALRQMQVDTSILGLSPDQARKNPYIASMGIYIFNREVLGKLLRQN-PEQTDFGKEIIPGAKTDYNLQAYLYKGYWEDIGTIEAFYESNLALTQQPQPPFSFYDEKAPIYTRPRYLPP 298          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.744e-68
Identity = 131/240 (54.58%), Postives = 171/240 (71.25%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPA-KFEFYDPKTPFYTSARFCHP 715
            +R+Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+    NV   LIL+GDHLYRMDY  F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +NDFGSE+IP +      VQA+L++ YWEDIGTI++F+ ANL +T++P   F FYD  +P YT  R+  P
Sbjct:  136 SRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE---HNVLEYLILAGDHLYRMDYERFVQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPFIASMGIYVISKDVMLNLLREQFPGANDFGSEVIPGATSIGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPP 370          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP4 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glgC PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.681e-68
Identity = 133/239 (55.65%), Postives = 167/239 (69.87%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQP-AKFEFYDPKTPFYTSARFCHP 715
            AR+YN      F DGFVEVLAA QTP      WFQGTADAVRQ++W+  D +   V+  LILSGDHLYRMDY  F+ +H DT ADIT+S +P+++  AS +GL+++D SG++  F+EKP+G  L  M+ DTT  GL+  +A   PY+ASMG+Y+F   VL++LL+ S P S DFG EIIP +  DHNVQ +LFNDYWEDIGTI SF+ ANLALT QP   F FYD K P YT  R+  P
Sbjct:   69 ARTYNFSG---FSDGFVEVLAAQQTP--ENPDWFQGTADAVRQYLWLLSDWE---VDYYLILSGDHLYRMDYRLFVNRHRDTNADITLSVLPVEEQVASSFGLLQVDHSGRVTAFSEKPQGEALTRMRVDTTDFGLTPAEAAHKPYLASMGIYVFNRQVLIDLLKQS-PQSTDFGKEIIPMAATDHNVQTYLFNDYWEDIGTISSFYEANLALTRQPQPPFSFYDEKAPIYTRPRYLPP 298          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_CYAA5 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glgC PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.984e-68
Identity = 133/238 (55.88%), Postives = 173/238 (72.69%), Query Frame = 2
Query:    5 RSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQP-AKFEFYDPKTPFYTSARFCHP 715
            R+YN      F DGFVEVLAA QT       WFQGTADAVRQ+ W+F++    +V+  LILSGDHLYRMDY++F+++H +T ADIT+S VP+D+ RAS +GLMKID +G+I+ F+EKPKG +LK MQ DT++LGL+   A + PYIASMG+Y+F    L +LL+++ P   DFG EIIP + KD+N+QA+LF  YWEDIGTI++F+ ANLAL  QP   F FY+ K P YT AR   P
Sbjct:   70 RTYNF---TGFHDGFVEVLAAQQTT--ENPSWFQGTADAVRQYGWLFDEW---DVDEYLILSGDHLYRMDYSDFVKRHRETGADITLSVVPIDEKRASSFGLMKIDDNGRIVDFSEKPKGEELKQMQVDTSILGLNPEQAKESPYIASMGIYVFNKKALNDLLKNN-PEQTDFGKEIIPGAAKDYNLQAYLFKGYWEDIGTIEAFYEANLALNRQPRPSFSFYNEKAPIYTRARNLPP 298          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGS_ARATH (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 1.043e-67
Identity = 131/240 (54.58%), Postives = 173/240 (72.08%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPA-KFEFYDPKTPFYTSARFCHP 715
            +R+Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+    NV   LIL+GDHLYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M+ DTT+LGL    A + P+IASMG+Y+   DV+L+LLR+ +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F+ ANL +T++P   F FYD   P YT  R+  P
Sbjct:  155 SRAYASNMGGYKNEGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE---HNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEQRATAFGLMKIDEEGRIIEFAEKPKGEHLKAMKVDTTILGLDDQRAKEMPFIASMGIYVVSRDVMLDLLRNQFPGANDFGSEVIPGATSLGLRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPP 389          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGS_SOLLC (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.362e-67
Identity = 130/240 (54.17%), Postives = 172/240 (71.67%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPA-KFEFYDPKTPFYTSARFCHP 715
            +R+Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+    NV   LIL+GDHLYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKP+G  L+ M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F+ ANL +T++P   F FYD   P YT  R+  P
Sbjct:  156 SRAYASNMGEYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HNVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPP 390          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGS_WHEAT (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.759e-67
Identity = 131/240 (54.58%), Postives = 168/240 (70.00%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQP-AKFEFYDPKTPFYTSARFCHP 715
            +R+Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+    NV   LIL+GDHLYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M  DTT+LGL    A + PYIASMG+Y+    V+L LLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F+ ANL +T++P   F FYD   P YT  R   P
Sbjct:  108 SRAYGSNIGGYKNEGFVEVLAAQQSPDNPD--WFQGTADAVRQYLWLFEE---HNVMEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEERATAFGLMKIDEEGRIIEFAEKPKGEQLKAMMVDTTILGLDDARAKEMPYIASMGIYVISKHVMLQLLREQFPGANDFGSEVIPGATSTGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPP 342          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGS_HORVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.759e-67
Identity = 131/240 (54.58%), Postives = 168/240 (70.00%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQP-AKFEFYDPKTPFYTSARFCHP 715
            +R+Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+    NV   LIL+GDHLYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M  DTT+LGL    A + PYIASMG+Y+    V+L LLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F+ ANL +T++P   F FYD   P YT  R   P
Sbjct:  148 SRAYGSNIGGYKNEGFVEVLAAQQSPDNPD--WFQGTADAVRQYLWLFEE---HNVMEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEERATAFGLMKIDEEGRIIEFAEKPKGEQLKAMMVDTTILGLEDARAKEMPYIASMGIYVISKHVMLQLLREQFPGANDFGSEVIPGATSTGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQPRHLPP 382          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGS1_VICFA (Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.759e-67
Identity = 130/240 (54.17%), Postives = 173/240 (72.08%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPA-KFEFYDPKTPFYTSARFCHP 715
            A + NLG   N  +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+    NV   LIL+GDHLYRMDY +F+Q H ++ ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKPKG  LK M+ DTT+LGL    A + P+IASMG+Y+   +V+L+LLR  +P +NDFGSE+IP +      VQA+L++ YWEDIGTI++F+ ANL +T++P   F FYD  +P YT  R+  P
Sbjct:  145 AYASNLGGYKN--EGFVEVLAAQQSP--ENPNWFQGTADAVRQYLWLFEE---HNVLEYLILAGDHLYRMDYEKFIQAHRESDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPKGEQLKAMKVDTTILGLDDERAKEMPFIASMGIYVISKNVMLDLLRDKFPGANDFGSEVIPGATSIGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSSPIYTQPRYLPP 377          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGS_SOLTU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 8.827e-67
Identity = 129/240 (53.75%), Postives = 171/240 (71.25%), Query Frame = 2
Query:    2 ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSEIIP-ASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPA-KFEFYDPKTPFYTSARFCHP 715
            +R+Y    G    +GFVEVLAA Q+P      WFQGTADAVRQ++W+FE+     V   LIL+GDHLYRMDY +F+Q H +T ADITV+ +PMD+ RA+ +GLMKID  G+II+FAEKP+G  L+ M+ DTT+LGL    A + P+IASMG+Y+   DV+LNLLR  +P +NDFGSE+IP A+     VQA+L++ YWEDIGTI++F+ ANL +T++P   F FYD   P YT  R+  P
Sbjct:  156 SRAYASNMGGYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIYTQPRYLPP 390          
The following BLAST results are available for this feature:
BLAST of FC931623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC_CYAP72.101e-6855.65Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGS_BETVU2.744e-6854.58Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_CYAP44.681e-6855.65Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_CYAA57.984e-6855.88Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGS_ARATH1.043e-6754.58Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLLC1.362e-6754.17Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_WHEAT6.759e-6754.58Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_HORVU6.759e-6754.58Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS1_VICFA6.759e-6754.17Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGS_SOLTU8.827e-6753.75Glucose-1-phosphate adenylyltransferase small subu... [more]

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Properties
Property NameValue
Genbank descriptionC34107C01EF PostHarvP1 Citrus clementina cDNA clone C34107C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931623 ID=FC931623; Name=FC931623; organism=Citrus clementina; type=EST; length=729bp
GGCGCGGTCGTATAATCTTGGAAATGGTGTGAATTTTGGGGATGGGTTTG
TAGAGGTTCTGGCTGCTACTCAAACTCCTGGAGAAGCAGGAAAGAAGTGG
TTCCAAGGGACAGCAGATGCTGTGAGGCAATTTATATGGGTCTTTGAGGA
CGCCAAGAATAAGAATGTGGAGAATGTTTTGATCTTGTCTGGTGATCACC
TTTACCGGATGGACTATACAGAGTTTCTGCAGAAGCATATCGACACAAAA
GCTGATATTACAGTCTCATGTGTACCAATGGATGACTGCCGTGCATCAGA
TTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCATCCAATTTGCTG
AGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTGATACTACTCTT
CTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTACATTGCATCAAT
GGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCTCTTGAGATCTA
GCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTCCAGCTTCTGTG
AAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTACTGGGAGGACAT
TGGAACAATAAAGTCCTTTTTTTATGCCAATTTGGCCCTCACAGAACAGC
CTGCGAAGTTTGAATTTTATGATCCCAAGACACCTTTCTATACGTCTGCT
AGATTCTGCCACCCACTAAGTGATCGATG
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