FC931623

Overview
NameFC931623
Unique NameFC931623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_MYCMM (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19
Identity = 61/214 (28.50%), Postives = 105/214 (49.07%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND------------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTP 685
            G +W+ G+ADA+ Q + +  D   ++ + +++   DH+YRMD  + ++ HID+ A +TV+ + +    AS +G +  D +G I  F EKP  P                PD     ++ SMG Y+F T VL++ +R+        +D G +IIP  V D     + F++            YW D+GT+ +F+ A++ L      F  Y+ + P
Sbjct:   95 GPRWYTGSADAIYQSLNLIYD---EDPDYIVVFGADHVYRMDPEQMVRFHIDSGAGVTVAGIRVPRADASAFGCIDADDAGTIRDFVEKPLEPP-------------GTPDDPTSTFV-SMGNYVFTTKVLIDAIRADADDDHSDHDMGGDIIPRLVADGMAAVYDFSNNEVPGATDRDRAYWRDVGTLDAFYDAHMDLVSVHPVFNLYNKRWP 291          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_KOCRD (Glucose-1-phosphate adenylyltransferase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.356e-19
Identity = 68/219 (31.05%), Postives = 111/219 (50.68%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRS--GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIP--ASVKDHNVQAFLFND----------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            GK WF G+A+A+ Q + + +DA   + + V+++  DH+YRMD+ + ++KHI++ A  TV+ V         +G+++ D     +I +F EKP          DTT     +PD     ++ASMG Y+F  D L+  LR+        +D G +I+P  A   +  V  F  ND          YW D+GT++S+F +++ L      F  Y+   P YT
Sbjct:   95 GKDWFLGSANAIYQSMNLIDDA---DPDIVVVVGADHVYRMDFADMVEKHIESGAKATVAGVRQPMEMVKSFGVIETDPQDPAKITRFVEKP----------DTT---APLPDD-PHSFLASMGNYVFDRDALVEALRTDNEKADTDHDMGGDIMPYFAERGEAVVYDFTHNDVPGSTDRDRQYWRDVGTLESYFDSHMDLIRPLPVFNLYNYDWPIYT 296          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_MYCUA (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium ulcerans (strain Agy99) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.076e-19
Identity = 61/214 (28.50%), Postives = 105/214 (49.07%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND------------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTP 685
            G +W+ G+ADA+ Q + +  D   ++ + +++   DH+YRMD  + ++ HID+ A +TV+ + +    AS +G +  D +G I  F EKP  P                PD     ++ SMG Y+F T VL++ +R+        +D G +IIP  V D     + F++            YW D+GT+ +F+ A++ L      F  Y+ + P
Sbjct:   95 GPRWYTGSADAIYQSLNLIYD---EDPDYIVVFGADHVYRMDPEQMVRFHIDSGAGVTVAGIRVPRADASAFGCIDADDAGTIRDFVEKPLEPP-------------GTPDDPTSTFV-SMGNYVFTTKVLIDAIRADADDDHSDHDMGGDIIPRLVADGMAVVYDFSNNEVPGATDRDRAYWRDVGTLDAFYDAHMDLVSVHPVFNLYNKRWP 291          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_FRASC (Glucose-1-phosphate adenylyltransferase OS=Frankia sp. (strain CcI3) GN=glgC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.018e-19
Identity = 70/232 (30.17%), Postives = 109/232 (46.98%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFI-WVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQ-FAEKPKG-PDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF------------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTS------ARFCH 712
            G +WF G+ADA+ Q +  V++DA     + V++   DH+YRMD  + + +H+D+ A +TV+ + +       +G+++    G+ I+ F EKP   P L G   +T                ASMG Y+F TDVL++ LR   +     +D G  IIP  V       + F              YW D+GT+ S+F A + L      F  Y+ + P  TS      A+F H
Sbjct:   94 GPRWFAGSADAIHQSLNLVYDDAP----DIVVVFGADHVYRMDPRQMVAQHLDSGAGVTVAGLRVPRSEGRAFGVIQTAPDGRTIEAFLEKPADPPGLPGSPEET---------------FASMGNYVFSTDVLIDALRKDAADEDSVHDMGGNIIPMLVAQRAAAVYDFAGNVVPGTTVRDRGYWRDVGTVDSYFEAQMDLCALDPVFNLYNREWPILTSIPSLPPAKFVH 306          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_ACIC1 (Glucose-1-phosphate adenylyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glgC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 65/225 (28.89%), Postives = 107/225 (47.56%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSG-----QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND------------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSAR 703
            G +WF G+ADA+ Q + +  D   +  + +L+   DH+YRMD  + L++HI + A +TV+ V +    A  +G+++   SG     ++ +F EKP   +           GL +PDA      ASMG Y F T  LL+ +    +    ++D G  IIP  V+  +   + F+             YW D+GT+ +++ A+  L      F  Y+   P YT  R
Sbjct:   95 GPRWFSGSADAIFQSLNLVYD---EQPDYILVFGADHIYRMDPRQMLEEHIASGASVTVAAVRVPRKDAHAFGVIQPAASGPERGRRVARFLEKPADTE-----------GLGLPDAPD-EVFASMGNYCFTTAALLDAVIRDAADERSAHDMGGNIIPMFVERGDAAVYDFHTNQVPGSTPRDHAYWRDVGTLDAYYDAHQDLVSVHPIFNLYNQDWPIYTHHR 304          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_STRAW (Glucose-1-phosphate adenylyltransferase OS=Streptomyces avermitilis GN=glgC PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.688e-17
Identity = 61/218 (27.98%), Postives = 105/218 (48.17%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQ-FAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFN------------DYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            G +W+ G+ADA+ Q + +  D +    E + +   DH+YRMD  + L +HI++ A +TV+ + +    +S +G++     GQ ++ F EKP  P   G+  D        P+ V     ASMG Y+F T VL+  L+         +D G  I+PA       + + F+             YW D+GT+ +++ A++ L  +   F  ++   P YT
Sbjct:   96 GPRWYLGSADAILQSLNLVYDERP---EYIAVFGADHVYRMDPRQMLGEHIESGAGVTVAGIRVPRAESSSFGVIAPGSDGQTVENFLEKPADP--PGLPGD--------PECV----FASMGNYVFTTKVLIEALQRDAEDGDSVHDMGGSILPALTDRGEARLYDFSANHVPGETTRDQGYWRDVGTLDAYYDAHMDLIAERPAFNLFNRSWPIYT 296          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLE (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 61/217 (28.11%), Postives = 103/217 (47.47%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS------SYPLSNDFGSEIIPASVKDHNVQAFLFND------------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTP 685
            G  W+ G+ADA+ Q + +  D   ++ + +++   DH+YRMD  + L+ HI + A  TV+ + +    A+ +G +  D SG+I +F EKP  P       D T +              SMG Y+F T VL++ +R+      SY   +D G +I+P  V       + F+             YW D+GT+ +F+ A++ L      F  Y+ + P
Sbjct:   95 GPHWYTGSADAIYQSLNLIYD---EDPDYLVVFGADHVYRMDPEQMLRFHIGSGAGATVAGIRVPRSDATAFGCIDADDSGRIRRFTEKPLKPPGTPDDPDKTFV--------------SMGNYIFTTKVLVDAIRADADDDHSY---HDMGGDILPRLVDGGMAAVYDFSQNEVPGATDWDRAYWRDVGTLDAFYDAHMDLVSLRPVFNLYNKRWP 291          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_MYCLB (Glucose-1-phosphate adenylyltransferase OS=Mycobacterium leprae (strain Br4923) GN=glgC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.094e-16
Identity = 61/217 (28.11%), Postives = 103/217 (47.47%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS------SYPLSNDFGSEIIPASVKDHNVQAFLFND------------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTP 685
            G  W+ G+ADA+ Q + +  D   ++ + +++   DH+YRMD  + L+ HI + A  TV+ + +    A+ +G +  D SG+I +F EKP  P       D T +              SMG Y+F T VL++ +R+      SY   +D G +I+P  V       + F+             YW D+GT+ +F+ A++ L      F  Y+ + P
Sbjct:   95 GPHWYTGSADAIYQSLNLIYD---EDPDYLVVFGADHVYRMDPEQMLRFHIGSGAGATVAGIRVPRSDATAFGCIDADDSGRIRRFTEKPLKPPGTPDDPDKTFV--------------SMGNYIFTTKVLVDAIRADADDDHSY---HDMGGDILPRLVDGGMAAVYDFSQNEVPGATDWDRAYWRDVGTLDAFYDAHMDLVSLRPVFNLYNKRWP 291          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_STRCO (Glucose-1-phosphate adenylyltransferase OS=Streptomyces coelicolor GN=glgC PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 64/225 (28.44%), Postives = 103/225 (45.78%), Query Frame = 2
Query:   89 GKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQ-FAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR--SSYPLS-NDFGSEIIPASVKDHNVQAFLFN------------DYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            G +WF G+ADA+ Q + +  D   +  E V +   DH+YRMD  + L +HI++ A +TV+ + +    +  +G++     GQ +  F EKP  P   G+  D        P  V     ASMG Y+F T  L+  L   +  P S +D G  I+P          + F+             YW D+GT+ +++ A++ L  +   F  Y+   P YT +    P
Sbjct:   89 GPRWFLGSADAILQSLNLVHD---EQPEYVAVFGADHVYRMDPRQMLAQHIESGAGVTVAGIRVPRAESPSFGVITPGSDGQTVTGFLEKPADP--PGLADD--------PGCV----FASMGNYVFTTKALVEALHRDAEDPDSVHDMGGSILPQLTDRGEAALYDFSANHVPGETTRDQGYWRDVGTLDAYYDAHMDLIAERPAFNLYNRDWPVYTHSTQLSP 296          
The following BLAST results are available for this feature:
BLAST of FC931623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC_MYCMM2.356e-1928.50Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_KOCRD2.356e-1931.05Glucose-1-phosphate adenylyltransferase OS=Kocuria... [more]
GLGC_MYCUA3.076e-1928.50Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_FRASC4.018e-1930.17Glucose-1-phosphate adenylyltransferase OS=Frankia... [more]
GLGC_ACIC15.802e-1828.89Glucose-1-phosphate adenylyltransferase OS=Acidoth... [more]
GLGC_STRAW1.688e-1727.98Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]
GLGC_MYCLE1.094e-1628.11Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_MYCLB1.094e-1628.11Glucose-1-phosphate adenylyltransferase OS=Mycobac... [more]
GLGC_STRCO4.158e-1628.44Glucose-1-phosphate adenylyltransferase OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionC34107C01EF PostHarvP1 Citrus clementina cDNA clone C34107C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931623 ID=FC931623; Name=FC931623; organism=Citrus clementina; type=EST; length=729bp
GGCGCGGTCGTATAATCTTGGAAATGGTGTGAATTTTGGGGATGGGTTTG
TAGAGGTTCTGGCTGCTACTCAAACTCCTGGAGAAGCAGGAAAGAAGTGG
TTCCAAGGGACAGCAGATGCTGTGAGGCAATTTATATGGGTCTTTGAGGA
CGCCAAGAATAAGAATGTGGAGAATGTTTTGATCTTGTCTGGTGATCACC
TTTACCGGATGGACTATACAGAGTTTCTGCAGAAGCATATCGACACAAAA
GCTGATATTACAGTCTCATGTGTACCAATGGATGACTGCCGTGCATCAGA
TTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCATCCAATTTGCTG
AGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTGATACTACTCTT
CTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTACATTGCATCAAT
GGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCTCTTGAGATCTA
GCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTCCAGCTTCTGTG
AAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTACTGGGAGGACAT
TGGAACAATAAAGTCCTTTTTTTATGCCAATTTGGCCCTCACAGAACAGC
CTGCGAAGTTTGAATTTTATGATCCCAAGACACCTTTCTATACGTCTGCT
AGATTCTGCCACCCACTAAGTGATCGATG
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