FC931623

Overview
NameFC931623
Unique NameFC931623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:1..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB5 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=glgC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.739e-30
Identity = 85/227 (37.44%), Postives = 122/227 (53.74%), Query Frame = 2
Query:   50 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSC--VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            VE+L A+Q   E    W+QGTADAV Q I +    +++  + V++LSGDH+YRMDY   L  H ++ AD+TVSC  VP+ +  A  +G+M++D   +I+ F EKP+ P       +  L              ASMG YLF T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD K P +T
Sbjct:   93 VEILPASQRYSE---NWYQGTADAVFQNIDII---RHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPQQPKHSPGNPEMCL--------------ASMGNYLFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWT 298          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_NITOC (Glucose-1-phosphate adenylyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glgC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.739e-30
Identity = 80/227 (35.24%), Postives = 125/227 (55.07%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDH-NVQAFLFND-------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            FVE++ A+Q   ++   W+ GTADAV Q + +    ++ N E VLIL+GDH+Y+MDY + L  H++ +AD+TV C+ +    A  +G+M +D + ++ +F EKP+ P     + D TL              ASMG+Y+F    L   L     ++  S+DFG +IIP+ ++ H  V AF F+D       YW D+GT+ +F+ ANL L     +   YD   P +T
Sbjct:   95 FVELMPASQRIEDS---WYAGTADAVYQNLDI---VRSHNPEYVLILAGDHVYKMDYGDMLAYHVEREADMTVGCIHVPLKEAKAFGVMSVDENFRVTEFTEKPEHPQPSPGRSDETL--------------ASMGIYVFNAAFLYEQLIKNADAFNSSHDFGKDIIPSILRSHYRVIAFPFSDVQGGDPGYWRDVGTVDAFWNANLELIGVSPELNLYDEDWPIWT 301          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC2_ALHEH (Glucose-1-phosphate adenylyltransferase 2 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glgC2 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.739e-30
Identity = 88/242 (36.36%), Postives = 125/242 (51.65%), Query Frame = 2
Query:    5 RSYNLGNGVNFGD--GFVEVLAATQ-TPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL--RSSYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            R   LG G   GD   FVE+L A Q T G     W++GTADAV Q + +    +  + + VLIL+GDH+Y+MDY   L +H++T AD+TV C+ +    AS +G+M +D   ++++F EKP  P     Q D  L              ASMG+Y+F    L N L   +     +DFG +IIP+ +    V AF F D       YW D+GTI +F+  NL L     +   YD + P +T
Sbjct:   79 RHLRLGWGSLRGDFGEFVEILPAQQRTEGS----WYRGTADAVYQSLDI---VRMHDPDYVLILAGDHVYKMDYGPMLARHVETGADVTVGCLEVPVEEASAFGVMAVDGDNRVVRFQEKPADPPSIPGQSDRAL--------------ASMGIYIFNRAFLFNQLIADARKESDHDFGKDIIPSLIDQARVIAFPFRDAATGGQAYWRDVGTIDAFWRTNLELVGVNPQLNLYDKEWPIWT 299          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_RHITR (Glucose-1-phosphate adenylyltransferase OS=Rhizobium tropici GN=glgC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 84/245 (34.29%), Postives = 125/245 (51.02%), Query Frame = 2
Query:   53 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT------SARFCHPLSDR 727
            ++L A+Q   E   +W++GTADAV Q I + E       E ++IL+GDH+Y+MDY   LQ+H+D+ AD+T+ C+ +    A  +G+M +D   +II F EKP  P               +P    F  +ASMG+Y+F T  L+  L+   +    S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T       A+F H   DR
Sbjct:   93 DILPASQRVSET--QWYEGTADAVYQNIDIIEPY---GPEYMVILAGDHIYKMDYEWMLQQHVDSGADVTIGCLEVPRMEAVGFGVMHVDDKDRIIDFVEKPADPP-------------GIPGNPDFA-LASMGIYVFHTKFLIECLKRDAADPNSSRDFGKDIIPHIVKNGKAVAHRFTQSCVRSDFEREAYWRDVGTIDAYWQANIDLTAVVPELDIYDKSWPIWTYAEISPPAKFVHDDEDR 318          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_DEIRA (Glucose-1-phosphate adenylyltransferase OS=Deinococcus radiodurans GN=glgC PE=3 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 77/226 (34.07%), Postives = 119/226 (52.65%), Query Frame = 2
Query:   83 EAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS---YPLSNDFGSEIIPASVKD-HNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            E G  W++GTADAV Q + + +   N   + V I SGDH+Y+M+    L+KHI+T+AD+T++  PM   +A  +G+M++D   ++ +F EK   P     Q D +L               SMG Y+F    L  LL +S        DFG  +IP ++ D ++VQA+ F           N YW D+GT+ ++F AN+ L     +F+ Y+P+ P  TS+ F  P
Sbjct:   96 ELGDAWYRGTADAVYQNMHLID---NFEADYVAIFSGDHIYKMNVEHMLEKHIETRADVTIAAYPMPQSQAHQFGVMQVDERWRVTEFHEKVPDPPTIPGQADLSL--------------TSMGNYIFSRRALEELLEASISGQETGYDFGHNVIPRALSDGYHVQAYDFHKNPIPGQERPNTYWRDVGTLDAYFEANMDLVSVNPEFDIYNPEWPLRTSSEFSPP 304          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_ROSDO (Glucose-1-phosphate adenylyltransferase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=glgC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 76/236 (32.20%), Postives = 122/236 (51.69%), Query Frame = 2
Query:   50 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL---SNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            +++L A+Q   +  + W++GTADAV Q   + E    K +   +IL+GDH+Y+ DY E ++ H+++ AD+TV C+ +    AS +G+MK+D   +I+ F EKP  P       D  L              ASMG+Y+F T+ L  ++     +   S+DFG +IIP  V+     A  F+            YW D+GT+ +F+ ANL LT+     + YD + P +T +    P
Sbjct:   91 LDILPASQQMND--ENWYKGTADAVAQNKDIIEGYGPKYI---IILAGDHIYKQDYAEMIRHHVESGADVTVGCIEVPRMEASGFGVMKVDTEDRILDFIEKPGDPPAMPGHPDQAL--------------ASMGIYVFETEYLFKIMEECAAVPGYSHDFGGDIIPTIVRGGKAVAHPFSRSCVRTVNEEAPYWRDVGTVDAFWQANLDLTDFKPALDLYDTEWPIWTYSELTAP 307          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_RHIRD (Glucose-1-phosphate adenylyltransferase OS=Rhizobium radiobacter GN=glgC PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 83/245 (33.88%), Postives = 126/245 (51.43%), Query Frame = 2
Query:   53 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT------SARFCHPLSDR 727
            ++L A+Q   E   +W++GTADAV Q I + E       E ++IL+GDH+Y+MDY   LQ+H+D+ AD+T+ C+ +    A+ +G+M ++   +II F EKP  P               +P    F  +ASMG+Y+F T  L+  +R   +    S DFG +IIP  V+     A  F D           YW D+GTI +++ AN+ LT+     + YD   P +T       A+F H   DR
Sbjct:   93 DILPASQRVSET--QWYEGTADAVYQNIDIIEPYAP---EYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPP-------------GIPGNEGFA-LASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDR 318          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_MAGSA (Glucose-1-phosphate adenylyltransferase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=glgC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 80/230 (34.78%), Postives = 120/230 (52.17%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            F+E+L A Q     G+ W++GTADAV Q + +    +    E+VL+L+GDH+Y+M Y + L  H+   AD+TV+C+ +    A  +G+M +D   ++I+F EKP  P       D  L              ASMG+Y+F   +L +LL+    +   S+DFG +IIP+ VK H V A  F D           YW D+GTI +++ AN+ LT        YD   P +T
Sbjct:  100 FIELLPAQQRT--QGENWYKGTADAVFQNLDIIHAHRP---EHVLVLAGDHVYKMHYGKMLAHHLAAGADVTVACIEVPLETAKGFGVMAVDEDDRVIRFDEKPDHPQPMPGHPDQAL--------------ASMGIYIFNAQLLFDLLQKDSINPETSHDFGKDIIPSLVKSHRVIAHHFQDSCVMHEGAREHYWRDVGTIDAYWEANIDLTTVTPALNLYDESWPIWT 310          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_AGRRK (Glucose-1-phosphate adenylyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 81/235 (34.47%), Postives = 121/235 (51.49%), Query Frame = 2
Query:   53 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            ++L A+Q   E   +W++GTADAV Q I + E       E ++IL+GDH+Y+MDY   LQ+H+D+ A++T+ C+ +    A  +G+M +D   QII F EKP  P               +P    F  +ASMG+Y+F T  L+  L+   +    S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A    P
Sbjct:   93 DILPASQRVSET--QWYEGTADAVYQNIDIIEPY---GPEYMVILAGDHIYKMDYEWMLQQHVDSGAEVTIGCLEVPRMEAVGFGVMHVDEKDQIIDFVEKPADPP-------------GIPGNPDFA-LASMGIYVFHTKFLIECLKRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAQSCVRSDFEREAYWRDVGTIDAYWQANIDLTAVVPELDIYDKSWPIWTYAEISPP 308          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB8 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS185) GN=glgC PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.874e-30
Identity = 84/227 (37.00%), Postives = 122/227 (53.74%), Query Frame = 2
Query:   50 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSC--VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            VE+L A+Q   E    W+QGTADAV Q I +    +++  + V++LSGDH+YRMDY   L  H ++ AD+TVSC  VP+ +  A  +G+M++D   +I+ F EKP+ P       +  L              ASMG Y+F T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD K P +T
Sbjct:   93 VEILPASQRYSE---NWYQGTADAVFQNIDII---RHELPKYVMVLSGDHVYRMDYAGLLAAHAESGADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPQQPKHSPGNPEMCL--------------ASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWT 298          
The following BLAST results are available for this feature:
BLAST of FC931623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC_SHEB51.739e-3037.44Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_NITOC1.739e-3035.24Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC2_ALHEH1.739e-3036.36Glucose-1-phosphate adenylyltransferase 2 OS=Alkal... [more]
GLGC_RHITR2.271e-3034.29Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_DEIRA2.271e-3034.07Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]
GLGC_ROSDO2.966e-3032.20Glucose-1-phosphate adenylyltransferase OS=Roseoba... [more]
GLGC_RHIRD2.966e-3033.88Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_MAGSA2.966e-3034.78Glucose-1-phosphate adenylyltransferase OS=Magneto... [more]
GLGC_AGRRK2.966e-3034.47Glucose-1-phosphate adenylyltransferase OS=Agrobac... [more]
GLGC_SHEB83.874e-3037.00Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]

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Properties
Property NameValue
Genbank descriptionC34107C01EF PostHarvP1 Citrus clementina cDNA clone C34107C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931623 ID=FC931623; Name=FC931623; organism=Citrus clementina; type=EST; length=729bp
GGCGCGGTCGTATAATCTTGGAAATGGTGTGAATTTTGGGGATGGGTTTG
TAGAGGTTCTGGCTGCTACTCAAACTCCTGGAGAAGCAGGAAAGAAGTGG
TTCCAAGGGACAGCAGATGCTGTGAGGCAATTTATATGGGTCTTTGAGGA
CGCCAAGAATAAGAATGTGGAGAATGTTTTGATCTTGTCTGGTGATCACC
TTTACCGGATGGACTATACAGAGTTTCTGCAGAAGCATATCGACACAAAA
GCTGATATTACAGTCTCATGTGTACCAATGGATGACTGCCGTGCATCAGA
TTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCATCCAATTTGCTG
AGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTGATACTACTCTT
CTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTACATTGCATCAAT
GGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCTCTTGAGATCTA
GCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTCCAGCTTCTGTG
AAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTACTGGGAGGACAT
TGGAACAATAAAGTCCTTTTTTTATGCCAATTTGGCCCTCACAGAACAGC
CTGCGAAGTTTGAATTTTATGATCCCAAGACACCTTTCTATACGTCTGCT
AGATTCTGCCACCCACTAAGTGATCGATG
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