FC931623

Overview
NameFC931623
Unique NameFC931623
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SHEPC (Glucose-1-phosphate adenylyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=glgC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 83/227 (36.56%), Postives = 124/227 (54.63%), Query Frame = 2
Query:   50 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSC--VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            VE+L A+Q   E    W+QGTADAV Q I +    +++  + V++LSGDH+YRMDY   L  H ++ AD+TVSC  VP+ +  A  +G++++D + +I+ F EKP+ P                PD  +   +ASMG Y+F T+ L   L+    +     DFG +IIP+ ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD K P +T
Sbjct:   93 VEILPASQRFSE---NWYQGTADAVFQNIDII---RHELPKYVMVLSGDHVYRMDYAGILAAHAESGADMTVSCLEVPIAEA-AGAFGVIEVDDNMRILGFEEKPQRPK-------------PSPDNPEM-CLASMGNYVFNTEFLFEQLKKDSQNATSDRDFGKDIIPSIIEKHNVFAYPFKSPFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWT 298          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SHEAM (Glucose-1-phosphate adenylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glgC PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 81/227 (35.68%), Postives = 119/227 (52.42%), Query Frame = 2
Query:   50 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSC--VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF-------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            VE+L A+Q   E+   W+QGTADAV Q I +    +++    V+ILSGDH+YRMDY   L  H  + AD+TV C  VP+ +  A  +G+M++    +++ F EKP  P       +  L              ASMG Y+F T+ L + LR    +     DFG +IIP+ +++H V A+ F        DYW D+GT+ +F+ AN+ L         YD K P +T
Sbjct:   95 VEILPASQRYSES---WYQGTADAVFQNIDII---RHELPRYVMILSGDHVYRMDYAGMLAAHAQSGADMTVCCQEVPVAEA-AGSFGVMEVAEDMRVVGFEEKPANPSCLPHDPERCL--------------ASMGNYVFNTEFLFDQLRKDAENVSSERDFGKDIIPSIIREHKVFAYAFKSGLGAGQDYWRDVGTLDTFWQANMELLSPEPHLNLYDAKWPIWT 300          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_PECCP (Glucose-1-phosphate adenylyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 82/237 (34.60%), Postives = 123/237 (51.90%), Query Frame = 2
Query:   47 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY--PLSN-DFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            FV++L A Q    A   W++GTADAV Q + +    +    E V+IL+GDH+Y+MDY+  L  H++  A+ TV+C+P+    AS +G+M +D+  +I+ FAEKP  P               MPD      +ASMG+Y+F  D L  LL + +  P SN DFG ++IP  V      A  F           N YW D+GT+++++ ANL L     + + YD   P  ++     P
Sbjct:   98 FVDLLPAQQR--NATDHWYRGTADAVCQNLDII---RRYRAEYVVILAGDHIYKMDYSRMLIDHVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKPDNP-------------TPMPDNPDMA-LASMGIYVFNADYLYQLLDADHNTPDSNHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDENQYWRDVGTLEAYWRANLDLASVTPELDVYDRHWPIRSAIESLPP 315          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_LACAC (Glucose-1-phosphate adenylyltransferase OS=Lactobacillus acidophilus GN=glgC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 80/233 (34.33%), Postives = 121/233 (51.93%), Query Frame = 2
Query:   14 NLGNGVNFGDGFVEVLAATQTP--GEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVK-DHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            ++GNGV++G   +   A    P    +G KWF+GTA A+ Q I   +   +K+ E VLILSGDH+Y+MDY   L++HI   A +TV+ + +    AS +G+M  D SG+I +F EKP+ P                         ASMG+Y+F    L  +L + +  ++   DFG  +IP  +K D  V A+ F+ YW+D+GTI S + AN+   +       YD     Y+
Sbjct:   68 HIGNGVSWGLDGLNASATILQPYTDNSGSKWFEGTAHAIYQNIDYID---SKDPEYVLILSGDHIYKMDYESMLEEHIKNGASLTVAVIDVPMKEASRFGIMNTDVSGRITEFEEKPEHPKSNH---------------------ASMGIYIFNWKRLREVLTTGFTTNDDMVDFGKNVIPYYLKSDERVFAYHFSGYWKDVGTIDSLWAANMEFLDGSDGLNLYDRSWRIYS 276          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_SACD2 (Glucose-1-phosphate adenylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glgC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 82/232 (35.34%), Postives = 123/232 (53.02%), Query Frame = 2
Query:   35 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSC--VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            FG+ +VE+L A+Q        W+QGTADA+ Q + + +    K +   L+LSGDH+Y+MDY   +  H++T AD+TVSC  VP+++  A  +G+M +D   +II+F EKP+ P     +   TL              ASMG Y+F T+ L + LR   +     +DFG  IIP  + +  V A+ F D       YW D+GT+ SF+ AN+ L         Y+   P +T
Sbjct:   91 FGE-YVEILPASQ---RYSPNWYQGTADAIYQNLDILQAEAPKYI---LVLSGDHVYQMDYGAIIAHHVETGADLTVSCIEVPIEEA-AGSFGVMTVDDDNRIIRFDEKPQRPTELANKPGYTL--------------ASMGNYVFNTEFLFDQLRKDAADPDSEHDFGKNIIPNIIAEKLVSAYRFRDHDTNETAYWRDVGTLDSFWEANMELVSPNPSLNLYNHDWPIWT 300          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_RHOP5 (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 78/235 (33.19%), Postives = 123/235 (52.34%), Query Frame = 2
Query:   53 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            ++L A+Q   E  + W+ GTADAV Q + + E   + + + +++L+GDH+Y+MDY + LQ+H+   A +TV C+ +    AS +G+M +D + QI+ F EKP  P              +MPD      +ASMG+Y+F T  L   LR   +    S+DFG +IIP  VK     A  F+            YW D+GT+ +++ AN+ LT+   + + YD   P +T      P
Sbjct:   93 DILPASQRVSE--ELWYLGTADAVYQNLDIIE---SYDPQFIVLLAGDHIYKMDYEKMLQQHVQQGAHVTVGCLEVPRKEASGFGVMHVDANDQILSFIEKPAHPP-------------AMPDKPDMA-LASMGIYVFETKFLFEELRRDAADKNSSHDFGKDIIPHIVKHGKAVAHRFDRSCIRSHAESASYWRDVGTVDAYWAANIDLTDIVPQLDLYDHNWPIWTYGEITPP 308          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_NOVAD (Glucose-1-phosphate adenylyltransferase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=glgC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 79/240 (32.92%), Postives = 126/240 (52.50%), Query Frame = 2
Query:   53 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTS------ARFCH 712
            ++L A+Q   E   +W++GTADAV Q + +      K +   +IL+GDH+Y+MDY   L++H+++ AD+T+ C+ +    A+ +G+M +D S  I  F EKP  P   G+  +  +             +ASMG+Y+F T  L ++LR   +    S DFG++IIP  V++    A  F            +YW D+GT+ ++F ANL LT+   K   YD   P +T       A+F H
Sbjct:   93 DILPASQRVSE--HQWYEGTADAVYQNLDIIASYAPKYM---VILAGDHIYKMDYELMLRQHVESGADVTIGCLVVPRIEATGFGVMAVDTSDTITAFVEKPANP--PGIPGNEDMA------------LASMGIYVFDTKFLFDILREDAADPSSSRDFGNDIIPKIVRNGKAVAHRFTASCIRAAEEIEEYWRDVGTLDAYFEANLDLTDVVPKLNMYDRDWPIWTDQIIAAPAKFVH 313          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_DECAR (Glucose-1-phosphate adenylyltransferase OS=Dechloromonas aromatica (strain RCB) GN=glgC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.541e-29
Identity = 79/233 (33.91%), Postives = 121/233 (51.93%), Query Frame = 2
Query:   41 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSC--VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            D F+++L A Q   E   +W+QGTADAV Q +      +    +++L+++GDH+Y+MDY   L  H+   AD+TV+C  VP+D+ R  ++G+M +D   ++I F EKP+ P     Q D  L              ASMG+Y+F T  L   L     +   + DFG +IIP  V  + V A  F D          YW D+GTI +++ AN+ +T+   +   YD   P +T
Sbjct:  107 DEFIQLLPAQQQIDET--QWYQGTADAVYQNLHFL---RRYQPDHILVVAGDHIYKMDYGRMLAHHVKHHADMTVACIDVPLDEAR--EFGVMGVDEQDRVIDFVEKPQNPPAIPGQPDRAL--------------ASMGIYIFNTKFLFEQLERDAMTKGSNRDFGKDIIPYIVPRYRVFAHRFADSCVGSDNHRPYWRDVGTIDAYWEANMEMTKVTPELNVYDRDWPIWT 318          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_NITMU (Glucose-1-phosphate adenylyltransferase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=glgC PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 80/244 (32.79%), Postives = 125/244 (51.23%), Query Frame = 2
Query:   14 NLGNGVNFGDG----FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYT 694
            ++  G  F DG    F+E+L A Q   E+   W+QGTADAV Q I +    ++ N + VLIL GDH+Y+MDY + L  HI   A++T++C+ +    AS +G+M + + G++  F EKP  P              ++P    +  + SMG+Y+F  D L + L   +     S+DFG ++IP  V    V    F+D          YW D+GT+++++ ANL L +       YD   P +T
Sbjct:   80 HIQQGWGFLDGRFQEFIELLPAQQRTEES---WYQGTADAVYQNIDIL---RSHNPDYVLILGGDHVYKMDYAKLLADHIAKSAEMTIACIDLPLEEASAFGVMSVTKDGRVTDFTEKPSVP-------------TAVPGRPGYA-LVSMGIYVFNADFLFDQLIRDHDDPNSSHDFGKDLIPHLVPRSRVFTHRFSDSCVNMVSGVPYWRDVGTVEAYWEANLDLVQVTPDLNLYDQDWPIWT 303          
BLAST of FC931623 vs. ExPASy Swiss-Prot
Match: GLGC_FERNB (Glucose-1-phosphate adenylyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glgC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.126e-28
Identity = 72/209 (34.45%), Postives = 106/209 (50.72%), Query Frame = 2
Query:   98 WFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFYANLALTEQPAKFEFYDPKTPFYTSARFCHP 715
            W++GTADAV Q I   E     N E +++LSGDH+Y MDY+EF+  HI   A  T++C+ +    A  +G+M  D   +II+F EKPK P                        +AS+G+Y+F  + +  +L          +DFG  IIP  +    V A+ F  YW+D+GTI+S++  NL L      F  +DP   FYT +   +P
Sbjct:   97 WYKGTADAVYQNI---EFVDEYNPEYIVVLSGDHIYSMDYSEFVYYHISKGALATIACMEVPITEAHRFGIMVTDIENKIIEFQEKPKNPKSN---------------------LASLGIYVFTWNFIKEVLIEDSKDNSSDHDFGKNIIPKILSTGKVYAYPFEGYWQDVGTIQSYWETNLELVRPIPPFNLHDPNWRFYTRSEEMNP 281          
The following BLAST results are available for this feature:
BLAST of FC931623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC_SHEPC3.279e-2936.56Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEAM3.279e-2935.68Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_PECCP4.283e-2934.60Glucose-1-phosphate adenylyltransferase OS=Pectoba... [more]
GLGC_LACAC4.283e-2934.33Glucose-1-phosphate adenylyltransferase OS=Lactoba... [more]
GLGC_SACD25.594e-2935.34Glucose-1-phosphate adenylyltransferase OS=Sacchar... [more]
GLGC_RHOP55.594e-2933.19Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_NOVAD9.541e-2932.92Glucose-1-phosphate adenylyltransferase OS=Novosph... [more]
GLGC_DECAR9.541e-2933.91Glucose-1-phosphate adenylyltransferase OS=Dechlor... [more]
GLGC_NITMU1.246e-2832.79Glucose-1-phosphate adenylyltransferase OS=Nitroso... [more]
GLGC_FERNB2.126e-2834.45Glucose-1-phosphate adenylyltransferase OS=Fervido... [more]

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Properties
Property NameValue
Genbank descriptionC34107C01EF PostHarvP1 Citrus clementina cDNA clone C34107C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931623 ID=FC931623; Name=FC931623; organism=Citrus clementina; type=EST; length=729bp
GGCGCGGTCGTATAATCTTGGAAATGGTGTGAATTTTGGGGATGGGTTTG
TAGAGGTTCTGGCTGCTACTCAAACTCCTGGAGAAGCAGGAAAGAAGTGG
TTCCAAGGGACAGCAGATGCTGTGAGGCAATTTATATGGGTCTTTGAGGA
CGCCAAGAATAAGAATGTGGAGAATGTTTTGATCTTGTCTGGTGATCACC
TTTACCGGATGGACTATACAGAGTTTCTGCAGAAGCATATCGACACAAAA
GCTGATATTACAGTCTCATGTGTACCAATGGATGACTGCCGTGCATCAGA
TTATGGACTAATGAAGATTGACCGCTCAGGGCAAATCATCCAATTTGCTG
AGAAACCTAAGGGCCCTGATCTGAAAGGAATGCAATGTGATACTACTCTT
CTTGGTCTATCTATGCCAGATGCTGTCAAATTTCCTTACATTGCATCAAT
GGGTGTTTACTTGTTTAGAACTGATGTCCTACTAAATCTCTTGAGATCTA
GCTATCCCTTATCCAATGACTTTGGCTCTGAAATTATTCCAGCTTCTGTG
AAGGATCACAATGTCCAAGCCTTTTTATTCAATGACTACTGGGAGGACAT
TGGAACAATAAAGTCCTTTTTTTATGCCAATTTGGCCCTCACAGAACAGC
CTGCGAAGTTTGAATTTTATGATCCCAAGACACCTTTCTATACGTCTGCT
AGATTCTGCCACCCACTAAGTGATCGATG
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