FC931630

Overview
NameFC931630
Unique NameFC931630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BACAN (Tryptophan synthase beta chain OS=Bacillus anthracis GN=trpB PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.452e-86
Identity = 149/227 (65.64%), Postives = 188/227 (82.82%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCA  GL+C+++MG +D+ RQ LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIG ET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEA
Sbjct:  113 ETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELLGAKVESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEA 339          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BACAC (Tryptophan synthase beta chain OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=trpB PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.452e-86
Identity = 149/227 (65.64%), Postives = 188/227 (82.82%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCA  GL+C+++MG +D+ RQ LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIG ET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEA
Sbjct:  113 ETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELLGAKVESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEA 339          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BACAA (Tryptophan synthase beta chain OS=Bacillus anthracis (strain A0248) GN=trpB PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.452e-86
Identity = 149/227 (65.64%), Postives = 188/227 (82.82%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCA  GL+C+++MG +D+ RQ LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIG ET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TDDEALEA
Sbjct:  113 ETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELLGAKVESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDDEALEA 339          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB1_PYRAB (Tryptophan synthase beta chain 1 OS=Pyrococcus abyssi GN=trpB1 PE=3 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.452e-86
Identity = 150/227 (66.08%), Postives = 183/227 (80.62%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATA   A  G++  +YMGA+D+ERQ +NVFRM+LLGA V  VH+G+ TLKDA +EA+RDWV   E +HY++GSV GPHPYP++VRDF +VIG+E R Q LE  G  PDV++ACVGGGSNAMG+F+ FV DK VRLIGVEA G G+ SGKH+A+L+ GE+GV HG LSY LQDE+GQI   HSI+ GLDYPGVGPEH++LK+ GRAEY  VTD+EAL A
Sbjct:  104 ETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVHTGSKTLKDAINEALRDWVATFEYSHYLIGSVVGPHPYPIIVRDFQSVIGREAREQILEAEGDLPDVIVACVGGGSNAMGIFYPFVKDKSVRLIGVEAGGKGIESGKHSASLNAGEIGVFHGMLSYFLQDEEGQIRTTHSIAPGLDYPGVGPEHAYLKESGRAEYVTVTDEEALRA 330          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_XANOM (Tryptophan synthase beta chain OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=trpB PE=3 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 5.814e-86
Identity = 149/227 (65.64%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV AR GL+C+VYMGA D+ERQ +NV+RM+LLGA V  V SG+ATLKDA +EA+RDWVTNV  T YI+G+VAGP PYP MVRDF+A++G+E+R Q LE +G  PD + ACVGGGSNA+GLFH F+ND  V++ G EAAG G+ +G+HAA+++ G  GVLHG  +Y++ D+DGQI E HSISAGLDYPGVGPEH+FL D GRA Y  +TDDEA+ A
Sbjct:  120 ETGAGQHGVASATVAARLGLECLVYMGATDIERQKINVYRMKLLGATVIPVTSGSATLKDALNEAMRDWVTNVRDTFYIIGTVAGPDPYPRMVRDFNAIVGRESRAQMLEDYGRLPDAISACVGGGSNAIGLFHAFLNDPGVKIYGAEAAGDGIATGRHAASIAAGRPGVLHGNRTYVICDDDGQITETHSISAGLDYPGVGPEHAFLSDSGRAVYQGITDDEAMAA 346          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRP_COPC7 (Tryptophan synthase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TRP-1 PE=3 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 7.594e-86
Identity = 149/227 (65.64%), Postives = 186/227 (81.94%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAE--VRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEAL 675
            ETGAGQHGVATATVCA+FGL+C++YMGA+D+ RQALNVFR+ +LG +  V  VHSG+ TLKDA +EA+RDWVTN+ TTHY++GS  GPHP+P +VRDF  VIG+E + Q  E  G  PDV++ACVGGGSNA+G F++F+ DK VRL+GVEA G G+   KH+ATLS G+ GVLHG  +Y+LQD+ GQIIE HSISAGLDYPGVGPEH++LKD GRA+Y   TD++AL
Sbjct:  402 ETGAGQHGVATATVCAKFGLECVIYMGAEDVRRQALNVFRIEMLGGKAWVIPVHSGSCTLKDAVNEAMRDWVTNLSTTHYLVGSAIGPHPFPTIVRDFQKVIGEEIKAQLKEVRGKLPDVVVACVGGGSNAIGTFYDFIPDKSVRLVGVEAGGEGIDGHKHSATLSMGQPGVLHGVRTYILQDKAGQIIETHSISAGLDYPGVGPEHAWLKDSGRADYVVCTDEDAL 628          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_XANOP (Tryptophan synthase beta chain OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=trpB PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.594e-86
Identity = 149/227 (65.64%), Postives = 184/227 (81.06%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV AR GL+C+VYMGA D+ERQ +NV+RM+LLGA V  V SG+ATLKDA +EA+RDWVTNV  T YI+G+VAGP PYP MVRDF+A++G+E R Q LE +G  PD + ACVGGGSNA+GLFH F+ND  V++ G EAAG G+ +G+HAA+++ G  GVLHG  +Y++ D+DGQI E HSISAGLDYPGVGPEH+FL D GRA Y  +TDDEA+ A
Sbjct:  120 ETGAGQHGVASATVAARLGLECLVYMGATDIERQKINVYRMKLLGATVIPVTSGSATLKDALNEAMRDWVTNVRDTFYIIGTVAGPDPYPRMVRDFNAIVGREARAQMLEDYGRLPDAISACVGGGSNAIGLFHAFLNDPGVKIYGAEAAGDGIATGRHAASIAAGRPGVLHGNRTYVICDDDGQITETHSISAGLDYPGVGPEHAFLSDSGRAVYQGITDDEAMAA 346          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_RHILO (Tryptophan synthase beta chain OS=Rhizobium loti GN=trpB PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.594e-86
Identity = 152/227 (66.96%), Postives = 184/227 (81.06%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFG  C+VYMGA D+ RQ+ NVFRM+LLGAEVR V +G  TLKDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R Q LE+ G  PD +IA VGGGSNA+GLFH F++DKDVR+IG+EA G GL   +H A+++ G  GVLHG  +YLLQ+ DGQI++ HSISAGLDYPGVGPEHS+L+D GR EY  + DDEALEA
Sbjct:  131 ETGAGQHGVASATVAARFGYPCVVYMGATDVARQSPNVFRMKLLGAEVRPVTAGHGTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARAQILEQEGRLPDTIIAAVGGGSNAIGLFHPFLDDKDVRIIGIEAGGRGLDGIEHCASMNAGSPGVLHGNRTYLLQNADGQIMDGHSISAGLDYPGVGPEHSWLRDSGRVEYVPILDDEALEA 357          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_PARDP (Tryptophan synthase beta chain OS=Paracoccus denitrificans (strain Pd 1222) GN=trpB PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.594e-86
Identity = 158/230 (68.70%), Postives = 189/230 (82.17%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWG-GK-PDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSG-KHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCARFGL+CIVYMGA D+ERQA NVFRMRLLGAEV  V SG  TLKDA ++A+RDWVTNV  T Y +G+VAGPHPYP MVRDF  +IG+ETRRQ  E+ G G+ PD ++A +GGGSNAMGLFH F+++  VR+IGVEA G G+    +H A+L+ G  GVLHG  +YLLQD +GQI+E HSISAGLDYPG+GPEH++LK++GRAEY +VTDDEAL A
Sbjct:  120 ETGAGQHGVATATVCARFGLKCIVYMGAHDVERQAPNVFRMRLLGAEVVPVTSGRGTLKDAMNDALRDWVTNVRDTFYCIGTVAGPHPYPAMVRDFQCIIGRETRRQLAEQEGEGRLPDSVVAAIGGGSNAMGLFHPFLDEPSVRIIGVEAGGKGVDERMQHCASLTGGRPGVLHGNRTYLLQDGEGQILEGHSISAGLDYPGIGPEHAWLKEQGRAEYVSVTDDEALAA 349          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_METNO (Tryptophan synthase beta chain OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=trpB PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 9.918e-86
Identity = 151/227 (66.52%), Postives = 183/227 (80.62%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATAT+CARFGL+C+VYMGA D+ERQ  NVFRM++LGAEV  V SGT TLKDA +EA+RDWVTNV  T Y +G+VAGPHPYP MVRDF AVIG+ET+ Q L   G  P+ L+AC+GGGSNAMGLFH F++D++V + GVEAAG G+ +G HAA+L+ G  GVLHG  +YLL +EDGQI + HSISAGLDYPG+GPEH++L + GR  Y + TD E LEA
Sbjct:  121 ETGAGQHGVATATLCARFGLKCVVYMGAVDVERQKPNVFRMKMLGAEVVPVQSGTRTLKDAMNEALRDWVTNVADTFYCIGTVAGPHPYPAMVRDFQAVIGRETKEQMLALEGRLPNSLVACIGGGSNAMGLFHPFLDDREVEIYGVEAAGRGVSTGLHAASLTGGRPGVLHGNRTYLLMNEDGQIADAHSISAGLDYPGIGPEHAWLHEMGRVTYLSATDQETLEA 347          
The following BLAST results are available for this feature:
BLAST of FC931630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
TRPB_BACAN4.452e-8665.64Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_BACAC4.452e-8665.64Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB_BACAA4.452e-8665.64Tryptophan synthase beta chain OS=Bacillus anthrac... [more]
TRPB1_PYRAB4.452e-8666.08Tryptophan synthase beta chain 1 OS=Pyrococcus aby... [more]
TRPB_XANOM5.814e-8665.64Tryptophan synthase beta chain OS=Xanthomonas oryz... [more]
TRP_COPC77.594e-8665.64Tryptophan synthase OS=Coprinopsis cinerea (strain... [more]
TRPB_XANOP7.594e-8665.64Tryptophan synthase beta chain OS=Xanthomonas oryz... [more]
TRPB_RHILO7.594e-8666.96Tryptophan synthase beta chain OS=Rhizobium loti G... [more]
TRPB_PARDP7.594e-8668.70Tryptophan synthase beta chain OS=Paracoccus denit... [more]
TRPB_METNO9.918e-8666.52Tryptophan synthase beta chain OS=Methylobacterium... [more]

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Properties
Property NameValue
Genbank descriptionC34107C08EF PostHarvP1 Citrus clementina cDNA clone C34107C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931630 ID=FC931630; Name=FC931630; organism=Citrus clementina; type=EST; length=682bp
GAGACAGGCGCCGGTCAGCACGGAGTTGCGACGGCTACTGTCTGCGCGCG
GTTCGGTTTGCAGTGTATCGTCTACATGGGTGCCCAGGACATGGAAAGGC
AGGCACTTAATGTGTTCAGAATGCGGCTTCTTGGTGCCGAGGTTAGAGCG
GTCCATTCTGGGACAGCCACGCTGAAGGATGCTACATCAGAAGCTATACG
GGACTGGGTGACTAATGTGGAAACTACCCATTACATTCTGGGATCTGTTG
CCGGGCCTCATCCGTACCCCATGATGGTCAGAGATTTCCATGCTGTGATT
GGAAAAGAAACAAGAAGACAAGCATTGGAGAAATGGGGTGGGAAACCAGA
TGTGCTGATTGCATGCGTTGGTGGTGGTTCAAATGCCATGGGTCTCTTCC
ACGAATTTGTTAATGACAAGGATGTTAGGTTGATTGGTGTGGAGGCAGCA
GGTTTTGGTCTAGGCAGTGGCAAACACGCTGCTACCTTGTCCAAAGGAGA
AGTTGGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATG
GGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGA
GTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTA
TAATGTCACAGATGATGAAGCATTGGAAGCTT
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