FC931630

Overview
NameFC931630
Unique NameFC931630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_LISW6 (Tryptophan synthase beta chain OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=trpB PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 9.918e-86
Identity = 149/227 (65.64%), Postives = 190/227 (83.70%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATV A F ++C ++MG +D++RQ+LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV NVE THYI+GSV GPHP+P +VRD+ +VIG E R+Q +EK G  P+ ++ACVGGGSNAMGLF+ FV+D  V++ GVEAAG GL +  HAAT+SKGE+G+LHGA+  +LQDE+GQI+E  SISAGLDYPG+GPEHSF +D GRAEY++VTDDEA+EA
Sbjct:  113 ETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELLGAKVVSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHMEKEGKLPEAIVACVGGGSNAMGLFYPFVDDSSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAEYHSVTDDEAVEA 339
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BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BRUSU (Tryptophan synthase beta chain OS=Brucella suis GN=trpB PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 9.918e-86
Identity = 150/227 (66.08%), Postives = 185/227 (81.50%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFGL CIVYMGA D+ERQ  NVFRM+LLGAEV+ V +G  TLKDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL   +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+A
Sbjct:  121 ETGAGQHGVASATVAARFGLPCIVYMGATDVERQKPNVFRMKLLGAEVKPVSAGNGTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDA 347
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BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BRUC2 (Tryptophan synthase beta chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=trpB PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 9.918e-86
Identity = 150/227 (66.08%), Postives = 185/227 (81.50%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFGL CIVYMGA D+ERQ  NVFRM+LLGAEV+ V +G  TLKDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL   +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+A
Sbjct:  121 ETGAGQHGVASATVAARFGLPCIVYMGATDVERQKPNVFRMKLLGAEVKPVSAGNGTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDA 347
[Close]
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BACCR (Tryptophan synthase beta chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.295e-85
Identity = 148/227 (65.20%), Postives = 188/227 (82.82%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCA  GL+C+++MG +D+ RQ LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIG ET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TD+EALEA
Sbjct:  113 ETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELLGAKVESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEA 339
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BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BACC4 (Tryptophan synthase beta chain OS=Bacillus cereus (strain B4264) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.295e-85
Identity = 148/227 (65.20%), Postives = 188/227 (82.82%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCA  GL+C+++MG +D+ RQ LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIG ET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TD+EALEA
Sbjct:  113 ETGAGQHGVATATVCALLGLECVIFMGEEDVRRQKLNVFRMELLGAKVESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGNETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEA 339
[Close]
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_LISMO (Tryptophan synthase beta chain OS=Listeria monocytogenes GN=trpB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.692e-85
Identity = 150/227 (66.08%), Postives = 189/227 (83.26%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATV A F ++C ++MG +D++RQ+LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV NVE THYI+GSV GPHP+P +VRD+ +VIG E R+Q LEK G  PD ++ACVGGGSNAMGLF+ FV+D  V++ GVEAAG GL +  HAAT+SKGE+G+LHGA+  +LQDE+GQI+E  SISAGLDYPG+GPEHSF +D GRA Y++VTDDEA+EA
Sbjct:  113 ETGAGQHGVATATVAALFNMKCTIFMGEEDVKRQSLNVFRMELLGAKVVSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDASVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEA 339
[Close]
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_LISMH (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.692e-85
Identity = 150/227 (66.08%), Postives = 189/227 (83.26%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATV A F ++C ++MG +D++RQ+LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV NVE THYI+GSV GPHP+P +VRD+ +VIG E R+Q LEK G  PD ++ACVGGGSNAMGLF+ FV+D  V++ GVEAAG GL +  HAAT+SKGE+G+LHGA+  +LQDE+GQI+E  SISAGLDYPG+GPEHSF +D GRA Y++VTDDEA+EA
Sbjct:  113 ETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELLGAKVVSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEA 339
[Close]
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_LISMF (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.692e-85
Identity = 150/227 (66.08%), Postives = 189/227 (83.26%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATV A F ++C ++MG +D++RQ+LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV NVE THYI+GSV GPHP+P +VRD+ +VIG E R+Q LEK G  PD ++ACVGGGSNAMGLF+ FV+D  V++ GVEAAG GL +  HAAT+SKGE+G+LHGA+  +LQDE+GQI+E  SISAGLDYPG+GPEHSF +D GRA Y++VTDDEA+EA
Sbjct:  113 ETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELLGAKVVSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEA 339
[Close]
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_LISMC (Tryptophan synthase beta chain OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.692e-85
Identity = 150/227 (66.08%), Postives = 189/227 (83.26%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATV A F ++C ++MG +D++RQ+LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV NVE THYI+GSV GPHP+P +VRD+ +VIG E R+Q LEK G  PD ++ACVGGGSNAMGLF+ FV+D  V++ GVEAAG GL +  HAAT+SKGE+G+LHGA+  +LQDE+GQI+E  SISAGLDYPG+GPEHSF +D GRA Y++VTDDEA+EA
Sbjct:  113 ETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELLGAKVVSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARKQHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATISKGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDDEAVEA 339
[Close]
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_CLOAB (Tryptophan synthase beta chain OS=Clostridium acetobutylicum GN=trpB PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.692e-85
Identity = 145/227 (63.88%), Postives = 189/227 (83.26%), Query Frame = 1 
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATAT  A FGL+C V+MGA+D+ERQALNVFRM++LGA+V +V SGT TLKDA + A+RDWVTN++ T+Y++GSV GPHPYP +V+DF  +IG+E R+Q L+  G  PD ++ACVGGGSN+MG+F+ F+ D+ V+LIGVEAAG G+ +  HAATL+KG VG++HG ++Y+LQDEDGQI   +S+SAGLDYPGVGP+HS+LK++ RA Y  VTD EAL+A
Sbjct:  106 ETGAGQHGVATATAAALFGLECEVFMGAEDVERQALNVFRMKILGAKVNSVKSGTNTLKDAINAAMRDWVTNIDNTYYVIGSVMGPHPYPTIVKDFQKIIGEEARKQILKAEGRLPDYVVACVGGGSNSMGIFYPFIKDEGVKLIGVEAAGLGIDTPMHAATLTKGSVGIIHGMMTYVLQDEDGQITPAYSVSAGLDYPGVGPQHSYLKEKERASYEAVTDKEALKA 332
The following BLAST results are available for this feature:
BLAST of FC931630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
TRPB_LISW69.918e-8665.64Tryptophan synthase beta chain OS=Listeria welshim... [more]
TRPB_BRUSU9.918e-8666.08Tryptophan synthase beta chain OS=Brucella suis GN... [more]
TRPB_BRUC29.918e-8666.08Tryptophan synthase beta chain OS=Brucella canis (... [more]
TRPB_BACCR1.295e-8565.20Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_BACC41.295e-8565.20Tryptophan synthase beta chain OS=Bacillus cereus ... [more]
TRPB_LISMO1.692e-8566.08Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMH1.692e-8566.08Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMF1.692e-8566.08Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_LISMC1.692e-8566.08Tryptophan synthase beta chain OS=Listeria monocyt... [more]
TRPB_CLOAB1.692e-8563.88Tryptophan synthase beta chain OS=Clostridium acet... [more]

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Properties
Property NameValue
Genbank descriptionC34107C08EF PostHarvP1 Citrus clementina cDNA clone C34107C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931630 ID=FC931630; Name=FC931630; organism=Citrus clementina; type=EST; length=682bp
GAGACAGGCGCCGGTCAGCACGGAGTTGCGACGGCTACTGTCTGCGCGCG
GTTCGGTTTGCAGTGTATCGTCTACATGGGTGCCCAGGACATGGAAAGGC
AGGCACTTAATGTGTTCAGAATGCGGCTTCTTGGTGCCGAGGTTAGAGCG
GTCCATTCTGGGACAGCCACGCTGAAGGATGCTACATCAGAAGCTATACG
GGACTGGGTGACTAATGTGGAAACTACCCATTACATTCTGGGATCTGTTG
CCGGGCCTCATCCGTACCCCATGATGGTCAGAGATTTCCATGCTGTGATT
GGAAAAGAAACAAGAAGACAAGCATTGGAGAAATGGGGTGGGAAACCAGA
TGTGCTGATTGCATGCGTTGGTGGTGGTTCAAATGCCATGGGTCTCTTCC
ACGAATTTGTTAATGACAAGGATGTTAGGTTGATTGGTGTGGAGGCAGCA
GGTTTTGGTCTAGGCAGTGGCAAACACGCTGCTACCTTGTCCAAAGGAGA
AGTTGGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATG
GGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGA
GTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTA
TAATGTCACAGATGATGAAGCATTGGAAGCTT
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