FC931630

Overview
NameFC931630
Unique NameFC931630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_THET8 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.209e-85
Identity = 156/228 (68.42%), Postives = 185/228 (81.14%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEF--VNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 678
            ETGAGQHGV+ ATV A FGL+C+VYMG +D+ RQALNVFRM+LLGAEVR V +G+ TLKDAT+EAIRDW+TNV TT YILGSV GPHPYPMMVRDF +VIG+E +RQ+LE +G  PD LIA VGGGSNA+GLF  F  + +   +LIGVEAAG GL +G+HAA++  G+ GVLHG+  YLL D DGQI   HS+SAGLDYPGVGPEHS+  D G AEY +VTD+EALE
Sbjct:  131 ETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALE 358          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_THET2 (Tryptophan synthase beta chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=trpB PE=1 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.209e-85
Identity = 156/228 (68.42%), Postives = 185/228 (81.14%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEF--VNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 678
            ETGAGQHGV+ ATV A FGL+C+VYMG +D+ RQALNVFRM+LLGAEVR V +G+ TLKDAT+EAIRDW+TNV TT YILGSV GPHPYPMMVRDF +VIG+E +RQ+LE +G  PD LIA VGGGSNA+GLF  F  + +   +LIGVEAAG GL +G+HAA++  G+ GVLHG+  YLL D DGQI   HS+SAGLDYPGVGPEHS+  D G AEY +VTD+EALE
Sbjct:  117 ETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAIRDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKLIGVEAAGEGLSTGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEALE 344          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_RHOFD (Tryptophan synthase beta chain OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.209e-85
Identity = 151/233 (64.81%), Postives = 186/233 (79.83%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGG------KPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATAT+CAR+GL+C+VYMG++D++RQ+ NV+RM LLGA V  V SG+ TLKDA +EA+RDWV NV+ T YI+G+VAGPHPYPMMVRDF +VIGKE   Q  E          +PD ++ACVGGGSNAMG+FH ++  +  RLIGVEAAG G+ SGKH+A+L +G  GVLHG  +Y+LQD++GQ+ E HSISAGLDYPGVGPEH+FLKD GRAEY  +TD EAL A
Sbjct:  114 ETGAGQHGVATATICARYGLECVVYMGSEDVKRQSPNVYRMNLLGATVVPVESGSRTLKDALNEAMRDWVANVDNTFYIIGTVAGPHPYPMMVRDFQSVIGKECLVQMPEMLQAAGCHTTQPDAVVACVGGGSNAMGIFHPYIAHEATRLIGVEAAGLGMDSGKHSASLQRGSPGVLHGNRTYVLQDDNGQVTETHSISAGLDYPGVGPEHAFLKDIGRAEYVGITDQEALAA 346          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_RHIME (Tryptophan synthase beta chain OS=Rhizobium meliloti GN=trpB PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.209e-85
Identity = 150/227 (66.08%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFGL C+VYMGA D+ERQA NVFRM+LLGAEV+ V +G  TLKDA +EA+RDWVTNV++T+Y++G+ AGPHPYP MVRDF AVIG+E ++Q LE  G  PD+++A VGGGSNA+G+FH F++D+ VR++GVEA G GL   +H A+L+ G  GVLHG  +YLLQD DGQI E HSISAGLDYPG+GPEH++L D GR EY  + D EALEA
Sbjct:  121 ETGAGQHGVASATVAARFGLPCVVYMGATDVERQAPNVFRMKLLGAEVKPVTAGNGTLKDAMNEALRDWVTNVDSTYYLIGTAAGPHPYPEMVRDFQAVIGEEAKQQILEAEGRLPDLVVAAVGGGSNAIGIFHSFLDDEGVRIVGVEAGGKGLDGDEHCASLTAGSPGVLHGNRTYLLQDGDGQIKEGHSISAGLDYPGIGPEHAWLNDIGRVEYVPIMDHEALEA 347          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_JANSC (Tryptophan synthase beta chain OS=Jannaschia sp. (strain CCS1) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.209e-85
Identity = 155/228 (67.98%), Postives = 184/228 (80.70%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSG-KHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCA+FGL+CIVYMGA D+ERQA NVFRM+LLGAEV  V SG  TLKDA ++A+RDWVTNV  T Y +G+VAGPHPYP MVRDF A+IGKETR Q +   G  PD LIA +GGGSNAMGLF  F++DK V +IGVEA G G+    +H A+L+ G  GVLHG  +YLLQDEDGQI+E HSISAGLDYPG+GPEH++L + GRA+Y ++TD EAL+A
Sbjct:  120 ETGAGQHGVATATVCAKFGLKCIVYMGATDVERQAPNVFRMKLLGAEVVPVTSGRGTLKDAMNDALRDWVTNVRDTFYCIGTVAGPHPYPAMVRDFQAIIGKETRDQMMAAEGRLPDTLIAAIGGGSNAMGLFFPFLDDKSVNIIGVEAGGHGVNEKMEHCASLTGGRPGVLHGNRTYLLQDEDGQILEGHSISAGLDYPGIGPEHAWLHEIGRAQYVSITDREALDA 347          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BRUME (Tryptophan synthase beta chain OS=Brucella melitensis GN=trpB PE=3 SV=2)

HSP 1 Score: 315.079 bits (806), Expect = 2.209e-85
Identity = 149/227 (65.64%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFGL CIVY+GA D+ERQ  NVFRM+LLGAEV+ V +G  TLKDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL   +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+A
Sbjct:  121 ETGAGQHGVASATVAARFGLPCIVYVGASDVERQKPNVFRMKLLGAEVKPVSAGNGTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDA 347          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BRUMB (Tryptophan synthase beta chain OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=trpB PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.209e-85
Identity = 149/227 (65.64%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFGL CIVY+GA D+ERQ  NVFRM+LLGAEV+ V +G  TLKDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL   +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+A
Sbjct:  121 ETGAGQHGVASATVAARFGLPCIVYVGASDVERQKPNVFRMKLLGAEVKPVSAGNGTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDA 347          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BRUAB (Tryptophan synthase beta chain OS=Brucella abortus GN=trpB PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.886e-85
Identity = 149/227 (65.64%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFGL CIVY+GA D+ERQ  NVFRM+LLGAEV+ V +G  TLKDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL   +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+A
Sbjct:  121 ETGAGQHGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKPVSAGNGTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDA 347          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA2 (Tryptophan synthase beta chain OS=Brucella abortus (strain 2308) GN=trpB PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.886e-85
Identity = 149/227 (65.64%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFGL CIVY+GA D+ERQ  NVFRM+LLGAEV+ V +G  TLKDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL   +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+A
Sbjct:  121 ETGAGQHGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKPVSAGNGTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDA 347          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BRUA1 (Tryptophan synthase beta chain OS=Brucella abortus (strain S19) GN=trpB PE=3 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.886e-85
Identity = 149/227 (65.64%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV ARFGL CIVY+GA D+ERQ  NVFRM+LLGAEV+ V +G  TLKDA +EA+RDWVTNVE T+Y++G+ AGPHPYP +VRDF +VIG E R+Q LE+ G  PDV++A VGGGSNA+GLFH F++D  V+++GVEA G GL   +H A++S G  GVLHG  +YLLQ+ DGQI+E HS+SAGLDYPGVGPEHS+LKD GR +Y  + D+EAL+A
Sbjct:  121 ETGAGQHGVASATVAARFGLPCIVYVGATDVERQKPNVFRMKLLGAEVKPVSAGNGTLKDAMNEALRDWVTNVEDTYYLIGTAAGPHPYPELVRDFQSVIGTEARQQILEQEGRLPDVIVAAVGGGSNAIGLFHPFLDDASVKIVGVEAGGRGLEGEEHCASMSAGRPGVLHGNRTYLLQNADGQILEGHSVSAGLDYPGVGPEHSWLKDSGRVDYVPILDNEALDA 347          
The following BLAST results are available for this feature:
BLAST of FC931630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
TRPB_THET82.209e-8568.42Tryptophan synthase beta chain OS=Thermus thermoph... [more]
TRPB_THET22.209e-8568.42Tryptophan synthase beta chain OS=Thermus thermoph... [more]
TRPB_RHOFD2.209e-8564.81Tryptophan synthase beta chain OS=Rhodoferax ferri... [more]
TRPB_RHIME2.209e-8566.08Tryptophan synthase beta chain OS=Rhizobium melilo... [more]
TRPB_JANSC2.209e-8567.98Tryptophan synthase beta chain OS=Jannaschia sp. (... [more]
TRPB_BRUME2.209e-8565.64Tryptophan synthase beta chain OS=Brucella meliten... [more]
TRPB_BRUMB2.209e-8565.64Tryptophan synthase beta chain OS=Brucella meliten... [more]
TRPB_BRUAB2.886e-8565.64Tryptophan synthase beta chain OS=Brucella abortus... [more]
TRPB_BRUA22.886e-8565.64Tryptophan synthase beta chain OS=Brucella abortus... [more]
TRPB_BRUA12.886e-8565.64Tryptophan synthase beta chain OS=Brucella abortus... [more]

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Properties
Property NameValue
Genbank descriptionC34107C08EF PostHarvP1 Citrus clementina cDNA clone C34107C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931630 ID=FC931630; Name=FC931630; organism=Citrus clementina; type=EST; length=682bp
GAGACAGGCGCCGGTCAGCACGGAGTTGCGACGGCTACTGTCTGCGCGCG
GTTCGGTTTGCAGTGTATCGTCTACATGGGTGCCCAGGACATGGAAAGGC
AGGCACTTAATGTGTTCAGAATGCGGCTTCTTGGTGCCGAGGTTAGAGCG
GTCCATTCTGGGACAGCCACGCTGAAGGATGCTACATCAGAAGCTATACG
GGACTGGGTGACTAATGTGGAAACTACCCATTACATTCTGGGATCTGTTG
CCGGGCCTCATCCGTACCCCATGATGGTCAGAGATTTCCATGCTGTGATT
GGAAAAGAAACAAGAAGACAAGCATTGGAGAAATGGGGTGGGAAACCAGA
TGTGCTGATTGCATGCGTTGGTGGTGGTTCAAATGCCATGGGTCTCTTCC
ACGAATTTGTTAATGACAAGGATGTTAGGTTGATTGGTGTGGAGGCAGCA
GGTTTTGGTCTAGGCAGTGGCAAACACGCTGCTACCTTGTCCAAAGGAGA
AGTTGGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATG
GGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGA
GTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTA
TAATGTCACAGATGATGAAGCATTGGAAGCTT
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