FC931630

Overview
NameFC931630
Unique NameFC931630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_METS4 (Tryptophan synthase beta chain OS=Methylobacterium sp. (strain 4-46) GN=trpB PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.083e-87
Identity = 152/227 (66.96%), Postives = 185/227 (81.50%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATAT+CARFGL+C+VYMGA D+ERQ  NVFRM++LGAEV  V SGT TLKDA +EA+RDWVTNV  T Y +G+VAGPHPYP MVRDF +VIG+ETR Q L + G  PD L+AC+GGGSNAMGLFH F++D+++ + GVEAAG G+ SG HAA+L+ G+ GVLHG  +YLL +EDGQI + HSISAGLDYPG+GPEH++L + GR  Y + TD E LEA
Sbjct:  121 ETGAGQHGVATATLCARFGLKCVVYMGAVDVERQKPNVFRMKMLGAEVVPVQSGTRTLKDAMNEALRDWVTNVADTFYCIGTVAGPHPYPAMVRDFQSVIGRETREQMLAQEGRLPDSLVACIGGGSNAMGLFHPFLDDREIEIYGVEAAGHGVSSGLHAASLTGGKPGVLHGNRTYLLMNEDGQIADAHSISAGLDYPGIGPEHAWLHEVGRVTYLSATDSETLEA 347          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_EXIS2 (Tryptophan synthase beta chain OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=trpB PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.259e-87
Identity = 151/227 (66.52%), Postives = 187/227 (82.38%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCA   L+C+++MG +D+ RQ LNVFRM LLGA+V +V  G+ TLKDA +EA+R WV +V+ THY++GSV GPHP+P +VRDF AVIG+ETR Q LEK G  P+ ++ACVGGGSNA+G+FH F++D++V L G+EAAG GL + KHAAT+SKGEVGVLHG++ YLLQDE GQ+ E HSISAGLDYPGVGPEHS LKD GR +Y  VTD +AL+A
Sbjct:  114 ETGAGQHGVATATVCALLDLECVIFMGEEDIRRQELNVFRMELLGAKVVSVTQGSRTLKDAVNEALRYWVKHVDDTHYLMGSVLGPHPFPEIVRDFQAVIGQETRTQILEKEGKLPEAIVACVGGGSNAIGMFHPFIDDEEVALYGIEAAGSGLETEKHAATMSKGEVGVLHGSMMYLLQDEHGQVTEAHSISAGLDYPGVGPEHSLLKDIGRVQYEAVTDQQALDA 340          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_DECAR (Tryptophan synthase beta chain OS=Dechloromonas aromatica (strain RCB) GN=trpB PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 5.259e-87
Identity = 153/227 (67.40%), Postives = 189/227 (83.26%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATV AR+G++C+VYMG++D++RQA NV+RM+LLGA V  V SG+ TLKDA +EA+RDWVTN+  T YI+G+VAGPHPYPM+VRDF  +IG+E   Q  E  G +PD +IACVGGGSNAMG+F+ ++N + VRLIGVEAAG G+ +G+H+A+L+ G  GVLHG  +YLLQDEDGQIIE HS+SAGLDYPGVGPEH++LKD GRAEY  VTD EAL A
Sbjct:  114 ETGAGQHGVATATVAARYGMECVVYMGSEDVKRQAANVYRMKLLGATVVPVESGSKTLKDALNEAMRDWVTNIHNTFYIIGTVAGPHPYPMLVRDFQKIIGEECLVQMPEMTGRQPDAVIACVGGGSNAMGIFYPYINVEGVRLIGVEAAGDGMETGRHSASLTAGVPGVLHGNRTYLLQDEDGQIIETHSVSAGLDYPGVGPEHAWLKDLGRAEYQPVTDSEALAA 340          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_XANCP (Tryptophan synthase beta chain OS=Xanthomonas campestris pv. campestris GN=trpB PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 6.868e-87
Identity = 150/227 (66.08%), Postives = 187/227 (82.38%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV AR GL+C+VYMGA D+ERQ +NV+RM+LLGA+V  V SG+ATLKDA +EA+RDWV+NV+ T YI+G+VAGP PYP MVRDF+A++G+E R Q LE +G  PD + ACVGGGSNA+GLFH F+ND  V++ G EAAG G+ SG+HAA+++ G  GVLHG  +Y++ D+DGQIIE HS+SAGLDYPGVGPEH+FL D GRA Y  +TDDEAL A
Sbjct:  120 ETGAGQHGVASATVAARLGLECVVYMGATDIERQKINVYRMQLLGAKVIPVTSGSATLKDALNEAMRDWVSNVQDTFYIIGTVAGPDPYPRMVRDFNAIVGREARAQMLEDYGRLPDAISACVGGGSNAIGLFHAFLNDPGVKIYGAEAAGDGIASGRHAASIAAGRPGVLHGNRTYVICDDDGQIIETHSVSAGLDYPGVGPEHAFLSDSGRAVYQGITDDEALAA 346          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_XANCB (Tryptophan synthase beta chain OS=Xanthomonas campestris pv. campestris (strain B100) GN=trpB PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 6.868e-87
Identity = 150/227 (66.08%), Postives = 187/227 (82.38%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV AR GL+C+VYMGA D+ERQ +NV+RM+LLGA+V  V SG+ATLKDA +EA+RDWV+NV+ T YI+G+VAGP PYP MVRDF+A++G+E R Q LE +G  PD + ACVGGGSNA+GLFH F+ND  V++ G EAAG G+ SG+HAA+++ G  GVLHG  +Y++ D+DGQIIE HS+SAGLDYPGVGPEH+FL D GRA Y  +TDDEAL A
Sbjct:  120 ETGAGQHGVASATVAARLGLECVVYMGATDIERQKINVYRMQLLGAKVIPVTSGSATLKDALNEAMRDWVSNVQDTFYIIGTVAGPDPYPRMVRDFNAIVGREARAQMLEDYGRLPDAISACVGGGSNAIGLFHAFLNDPGVKIYGAEAAGDGIASGRHAASIAAGRPGVLHGNRTYVICDDDGQIIETHSVSAGLDYPGVGPEHAFLSDSGRAVYQGITDDEALAA 346          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_XANC8 (Tryptophan synthase beta chain OS=Xanthomonas campestris pv. campestris (strain 8004) GN=trpB PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 6.868e-87
Identity = 150/227 (66.08%), Postives = 187/227 (82.38%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVA+ATV AR GL+C+VYMGA D+ERQ +NV+RM+LLGA+V  V SG+ATLKDA +EA+RDWV+NV+ T YI+G+VAGP PYP MVRDF+A++G+E R Q LE +G  PD + ACVGGGSNA+GLFH F+ND  V++ G EAAG G+ SG+HAA+++ G  GVLHG  +Y++ D+DGQIIE HS+SAGLDYPGVGPEH+FL D GRA Y  +TDDEAL A
Sbjct:  120 ETGAGQHGVASATVAARLGLECVVYMGATDIERQKINVYRMQLLGAKVIPVTSGSATLKDALNEAMRDWVSNVQDTFYIIGTVAGPDPYPRMVRDFNAIVGREARAQMLEDYGRLPDAISACVGGGSNAIGLFHAFLNDPGVKIYGAEAAGDGIASGRHAASIAAGRPGVLHGNRTYVICDDDGQIIETHSVSAGLDYPGVGPEHAFLSDSGRAVYQGITDDEALAA 346          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_SULSY (Tryptophan synthase beta chain OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=trpB PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 6.868e-87
Identity = 149/226 (65.93%), Postives = 186/226 (82.30%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALE 678
            ETGAGQHGV+TAT  + FGL+C +YMG +D ERQALNVFRM+LLGAEV+ V +G+ TLKDA +EA+RDWVTNV+TTHYI+GS  GPHP+PM+VRDF +VIG+E ++Q LE  G  PDV++ACVGGGSNA+G+F+ F+ D  VRL+GVEA G+G+ +G HAA+++ G +GVLHG  SY +QDE GQI   HSISAGLDYPGVGPEH+FLK+  RAEY   TD+EALE
Sbjct:  113 ETGAGQHGVSTATAASLFGLECTIYMGEEDAERQALNVFRMKLLGAEVKIVKAGSRTLKDAVNEALRDWVTNVKTTHYIIGSALGPHPFPMIVRDFQSVIGEEVKQQILEIEGKLPDVIVACVGGGSNAIGIFYPFIEDTQVRLVGVEAGGYGIETGMHAASINGGTIGVLHGMKSYFIQDEWGQIESTHSISAGLDYPGVGPEHAFLKEIKRAEYITATDEEALE 338          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_CHRVO (Tryptophan synthase beta chain OS=Chromobacterium violaceum GN=trpB PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 6.868e-87
Identity = 153/228 (67.11%), Postives = 189/228 (82.89%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKG-EVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATV AR+G++C+VYMGA+D++RQ+ NVFRM+LLGA V  V SG+ TLKDA +EA+RDWVTNV++T YILG+ AGPHPYPM+VRDF +VIG E++ Q  E  G +PDV++ACVGGGSNA+G+FH ++    VR++GVEA G G+ SGKHAA +S G  VGVLHG+ SYL+QD DGQI+E HS+SAGLDYPGVGPEH  LKD GRAEY ++ DDEAL A
Sbjct:  114 ETGAGQHGVATATVAARYGMECVVYMGAEDVKRQSPNVFRMKLLGATVVPVESGSKTLKDALNEAMRDWVTNVDSTFYILGTAAGPHPYPMLVRDFVSVIGAESKIQMPEAIGRQPDVVVACVGGGSNAIGMFHPYIEVPGVRMVGVEAGGHGVASGKHAAPISSGAPVGVLHGSKSYLMQDADGQIVETHSVSAGLDYPGVGPEHCHLKDIGRAEYVSIDDDEALRA 341          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_BACWK (Tryptophan synthase beta chain OS=Bacillus weihenstephanensis (strain KBAB4) GN=trpB PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 6.868e-87
Identity = 150/227 (66.08%), Postives = 190/227 (83.70%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSGKHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATVCA FGL+C+++MG +D+ RQ LNVFRM LLGA+V +V +G+ TLKDA +EA+R WV++V  THYI+GSV GPHP+P +VRDF +VIGKET++Q     G  P+ ++AC+GGGSNAMG+F+ FV+D++V L GVEAAG G+ + KHAATL+KG VGVLHG++ YLLQ+E+GQI E HSISAGLDYPGVGPEHS LKD GR  Y+++TD+EALEA
Sbjct:  113 ETGAGQHGVATATVCALFGLECVIFMGEEDVRRQKLNVFRMELLGAKVESVAAGSGTLKDAVNEALRYWVSHVHDTHYIMGSVLGPHPFPQIVRDFQSVIGKETKKQYEALEGKLPEAVVACIGGGSNAMGMFYPFVHDEEVALYGVEAAGKGVHTEKHAATLTKGSVGVLHGSMMYLLQNEEGQIQEAHSISAGLDYPGVGPEHSLLKDIGRVSYHSITDEEALEA 339          
BLAST of FC931630 vs. ExPASy Swiss-Prot
Match: TRPB_RUTMC (Tryptophan synthase beta chain OS=Ruthia magnifica subsp. Calyptogena magnifica GN=trpB PE=3 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 8.970e-87
Identity = 155/229 (67.69%), Postives = 185/229 (80.79%), Query Frame = 1
Query:    1 ETGAGQHGVATATVCARFGLQCIVYMGAQDMERQALNVFRMRLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVNDKDVRLIGVEAAGFGLGSG--KHAATLSKGEVGVLHGALSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDEGRAEYYNVTDDEALEA 681
            ETGAGQHGVATATV AR GL+C+VYMG  D+ RQALNVFRM+LLGA V  V  G+ TLKD+ +EA+RDWVTN++ T YI+G+V GPHPYPMMVRDF ++IGKET+ Q   + GG PDVL+ACVGGGSNA+GLFH F++D  V + GVEAAG+GL  G   H+A L  G VGVLHG  +YL++DE+GQIIE HSISAGLDYPGVGPEH++LKD GRA Y  +TD EALEA
Sbjct:  114 ETGAGQHGVATATVAARLGLECVVYMGEVDVARQALNVFRMKLLGATVIPVTLGSKTLKDSINEAMRDWVTNIDDTFYIIGTVVGPHPYPMMVRDFQSIIGKETKVQFAAQVGGLPDVLVACVGGGSNAIGLFHAFIDDASVEIYGVEAAGYGLEKGPTAHSAPLCAGSVGVLHGNRTYLMEDENGQIIEGHSISAGLDYPGVGPEHAYLKDSGRARYVAITDKEALEA 342          
The following BLAST results are available for this feature:
BLAST of FC931630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 447
Match NameE-valueIdentityDescription
TRPB_METS43.083e-8766.96Tryptophan synthase beta chain OS=Methylobacterium... [more]
TRPB_EXIS25.259e-8766.52Tryptophan synthase beta chain OS=Exiguobacterium ... [more]
TRPB_DECAR5.259e-8767.40Tryptophan synthase beta chain OS=Dechloromonas ar... [more]
TRPB_XANCP6.868e-8766.08Tryptophan synthase beta chain OS=Xanthomonas camp... [more]
TRPB_XANCB6.868e-8766.08Tryptophan synthase beta chain OS=Xanthomonas camp... [more]
TRPB_XANC86.868e-8766.08Tryptophan synthase beta chain OS=Xanthomonas camp... [more]
TRPB_SULSY6.868e-8765.93Tryptophan synthase beta chain OS=Sulfurihydrogeni... [more]
TRPB_CHRVO6.868e-8767.11Tryptophan synthase beta chain OS=Chromobacterium ... [more]
TRPB_BACWK6.868e-8766.08Tryptophan synthase beta chain OS=Bacillus weihens... [more]
TRPB_RUTMC8.970e-8767.69Tryptophan synthase beta chain OS=Ruthia magnifica... [more]

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Properties
Property NameValue
Genbank descriptionC34107C08EF PostHarvP1 Citrus clementina cDNA clone C34107C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931630 ID=FC931630; Name=FC931630; organism=Citrus clementina; type=EST; length=682bp
GAGACAGGCGCCGGTCAGCACGGAGTTGCGACGGCTACTGTCTGCGCGCG
GTTCGGTTTGCAGTGTATCGTCTACATGGGTGCCCAGGACATGGAAAGGC
AGGCACTTAATGTGTTCAGAATGCGGCTTCTTGGTGCCGAGGTTAGAGCG
GTCCATTCTGGGACAGCCACGCTGAAGGATGCTACATCAGAAGCTATACG
GGACTGGGTGACTAATGTGGAAACTACCCATTACATTCTGGGATCTGTTG
CCGGGCCTCATCCGTACCCCATGATGGTCAGAGATTTCCATGCTGTGATT
GGAAAAGAAACAAGAAGACAAGCATTGGAGAAATGGGGTGGGAAACCAGA
TGTGCTGATTGCATGCGTTGGTGGTGGTTCAAATGCCATGGGTCTCTTCC
ACGAATTTGTTAATGACAAGGATGTTAGGTTGATTGGTGTGGAGGCAGCA
GGTTTTGGTCTAGGCAGTGGCAAACACGCTGCTACCTTGTCCAAAGGAGA
AGTTGGGGTGTTGCATGGTGCTTTGAGCTATTTGCTGCAGGATGAAGATG
GGCAAATAATTGAGCCACACTCCATTAGTGCAGGCTTAGATTACCCTGGA
GTTGGACCTGAGCATAGTTTTCTGAAAGATGAAGGGCGTGCTGAGTACTA
TAATGTCACAGATGATGAAGCATTGGAAGCTT
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