FC931636

Overview
NameFC931636
Unique NameFC931636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:191..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.699e-12
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1
Query:  283 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 468
            +  YRG+R+RPWGK+AAEIRDP  KGVRVWLGTF+T              +RG KA +NFP E
Sbjct:   69 QRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLE 131          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  268 TERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 462
            T  +++  +RG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:   25 TTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 1
Query:  262 KSTERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 462
            K+ + + +  YRG+R+RPWGK+AAEIRDP  KG R+WLGT++T              +RG+KA +NFP
Sbjct:   78 KTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.832e-12
Identity = 40/114 (35.09%), Postives = 57/114 (50.00%), Query Frame = 1
Query:  250 EQAKKSTERKRKNQ---------YRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA--AAPKSSVKANSQKSVPKACLSPVQPSL 558
            + +  S +RKRK +         YRG+RQR WGKW AEIR+P K  R WLGTF T              + G +A++N    +P+  ++  SSV A S  S   +    ++P L
Sbjct:   32 DSSTSSAQRKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLNLTPSSPSSVSSSSSSVSAASSPSTSSSSTQTLRPLL 145          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.241e-12
Identity = 44/148 (29.73%), Postives = 63/148 (42.57%), Query Frame = 1
Query:  226 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP------------DETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKP 633
            GS A             K+K  YRG+RQR WGKW AEIR P   +RVWLGT++T              +RG+ A++NFP            D +   A K++V    Q    +      + S+  + N    +D    ++  IL   P
Sbjct:  114 GSPAAAFAAALAAGRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPSELLGLGDSSKLIALKNAVDGKIQSICQRVRKERAKKSVKVSKNSSATADSSCLSSPEILSSSP 261          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 35/82 (42.68%), Postives = 42/82 (51.22%), Query Frame = 1
Query:  220 SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 465
            SHGS         KK  + K K  YRG R R WGKW +EIR+P K  R+WLGTF T              I+G  A +NFP+
Sbjct:    4 SHGSDT--ECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPE 83          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 41/119 (34.45%), Postives = 58/119 (48.74%), Query Frame = 1
Query:  274 RKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA--------AAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYN 606
            RKR   Y+GIR R WGKW AEIR+P K  R+WLG+++T              +RG  A++NFP+  P         +A     KA    +   A  + VQ + ++ F    +SD D  N
Sbjct:   15 RKRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLPGEKFSDEDMSAATIRKKATEVGAQVDALGTAVQNNRHRVFGQNRDSDVDNKN 133          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  289 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANS 510
            +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NF     ++  +SS   +S
Sbjct:   30 RYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSSPTQSSTVVDS 103          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  214 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 462
            R+   + A   V      +   ++ ++RG+R+RPWG++AAEIRDP K  RVWLGTF++              +RG KAK NFP
Sbjct:    2 RRGRAAAAPAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.836e-11
Identity = 41/96 (42.71%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  196 STFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF---PDETP 474
            S+ +A RK         V +   ST  K K +YRG+RQRPWGK+AAEIRDP+   R+WLGTF T              ++G KA  NF   P  TP
Sbjct:   74 SSSTAARKGKHKEEESVVVEDDVSTSVKPK-KYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTP 168          
The following BLAST results are available for this feature:
BLAST of FC931636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
EF105_ARATH3.699e-1255.56Ethylene-responsive transcription factor ERF105 OS... [more]
ERF80_ARATH4.832e-1249.23Ethylene-responsive transcription factor 9 OS=Arab... [more]
EF104_ARATH4.832e-1247.06Ethylene-responsive transcription factor ERF104 OS... [more]
ABI4_ARATH4.832e-1235.09Ethylene-responsive transcription factor ABI4 OS=A... [more]
ERF61_ARATH8.241e-1229.73Ethylene-responsive transcription factor ERF061 OS... [more]
ERF42_ARATH1.406e-1142.68Ethylene-responsive transcription factor ERF042 OS... [more]
ERF10_ARATH1.406e-1134.45Ethylene-responsive transcription factor ERF010 OS... [more]
ERF79_ARATH1.836e-1145.95Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF3_TOBAC1.836e-1139.76Ethylene-responsive transcription factor 3 OS=Nico... [more]
CRF6_ARATH1.836e-1142.71Ethylene-responsive transcription factor CRF6 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC34107D03EF PostHarvP1 Citrus clementina cDNA clone C34107D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931636 ID=FC931636; Name=FC931636; organism=Citrus clementina; type=EST; length=734bp
GACTGAAGAATCCAAAACTCTCTCAAGCCAAAGAAGCTGGAGCTGAAGAG
GTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGG
CTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGT
GACGTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAGCCTTCCAC
TTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTG
AACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGA
ATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCAC
AAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCG
CTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAG
GTTAACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAGAGCTCAGTGAA
GGCAAACTCTCAGAAATCCGTTCCCAAAGCTTGCCTAAGCCCCGTGCAGC
CAAGTTTGAACCAAAACTTCAATTACTTGAACAACTCCGATCAGGATTAC
TACAACAATGTGAGTATTCTGGAGGAGAAACCACAGTGAATCAGTATGGA
TATATGGGCTCCTTCCCTGATGATGGAGAACTAGGATTCAACCCTTTGTG
CCACAGCTGATGATACTCCTGTGTACTTCACTCT
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