FC931636

Overview
NameFC931636
Unique NameFC931636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  205 SAGRKSHGSTAVK--HVEQAKKSTERKRKNQ-YRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFN 573
            S   KS  ++AV+  + E+ KK  +   K+  YRG+R+R WGKW +EIR+P K  R+WLGTF +              I+G  A +NFPD   +    SS+   S + +  A L       +Q+F+
Sbjct:    4 SESTKSWEASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSL---SPRDIQVAALKAAHMETSQSFS 126          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1
Query:  250 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 468
            E+ K++     + +Y+GIR R WGKW AEIR+P K  R+WLG++ T              +RG  A++NFP+E
Sbjct:   22 EKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEE 94          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  289 QYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNS 588
            +YRG+R+RPWGK+AAEIRD  K G RVWLGTF+T              +RG+ A +NFP E    +  SS  A +  S   A  S     + + F YL++S
Sbjct:   14 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASASSSSRQVFE-FEYLDDS 113          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 38/108 (35.19%), Postives = 53/108 (49.07%), Query Frame = 1
Query:  244 HVEQAKKSTERKRKNQ---YRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD-ETPAAAPKSSVKANSQKSVPKACLSPVQPS 555
            H + + ++  +KR      YRG+R R WGKW +EIR+P K  R+WLGTF+T              I+G  A +NFP+  T    P SS   + Q +   A      PS
Sbjct:   24 HQQDSHRTNTKKRVRSDPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPS 131          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1
Query:  274 RKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 465
            RKR   Y+GIR R WGKW AEIR+P K  R+WLG+++T              +RG  A++NFP+
Sbjct:   24 RKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPE 87          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 38/107 (35.51%), Postives = 50/107 (46.73%), Query Frame = 1
Query:  232 TAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQP 552
            T++K ++ A K  +      YRG+RQR WGKW AEIR P    R+WLGTF T              IRG  A++NFPD       K  +  +    +   C S   P
Sbjct:   96 TSMKKIDVATKPVKL-----YRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIVRQGHYKQILSPSINAKIESICNSSDLP 197          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 44/116 (37.93%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  229 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPK---------------SSVKANSQKSVPK 528
            ST+V     A  + + K ++ YRG+RQRPWGK+AAEIRDP K G RVWLGT+ +              +RG KA +NFP       P+               SSV + S+   PK
Sbjct:   87 STSVSPPTVAPAALQPKGRH-YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLSESASSSVSSASESGSPK 201          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 44/110 (40.00%), Postives = 53/110 (48.18%), Query Frame = 1
Query:  289 QYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVS 615
            +YRG+R+RPWGK+AAEIRD  + G RVWLGTF T              +RG KA +NFP E            N+  SV K        SL  N    NN+     N VS
Sbjct:   58 KYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSEI----------VNASVSVDKL-------SLCSNSYTTNNNSDSSLNEVS 150          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  250 EQAKKST--ERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 462
            E+ K++T    + +  YRG+R+RPWGK+AAEIRD T KG+RVWLGTF+T              ++G  A +NFP
Sbjct:   66 EEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
BLAST of FC931636 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 1
Query:  277 KRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 465
            K KN YRG+RQR WGKW AEIR P    R+WLGTF T              +RG  AK+NFP+
Sbjct:   66 KTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPN 128          
The following BLAST results are available for this feature:
BLAST of FC931636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
TINY_ARATH2.398e-1134.13Ethylene-responsive transcription factor TINY OS=A... [more]
RAP29_ARATH2.398e-1139.73Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF96_ARATH2.398e-1141.58Ethylene-responsive transcription factor ERF096 OS... [more]
ERF37_ARATH2.398e-1135.19Ethylene-responsive transcription factor ERF037 OS... [more]
RA210_ARATH3.132e-1145.31Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF57_ARATH3.132e-1135.51Ethylene-responsive transcription factor ERF057 OS... [more]
ERF1_SOLLC3.132e-1137.93Ethylene-responsive transcription factor 1 OS=Sola... [more]
PTI5_SOLLC4.090e-1140.00Pathogenesis-related genes transcriptional activat... [more]
ERF94_ARATH4.090e-1145.95Ethylene-responsive transcription factor ERF094 OS... [more]
ERF56_ARATH4.090e-1150.79Ethylene-responsive transcription factor ERF056 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34107D03EF PostHarvP1 Citrus clementina cDNA clone C34107D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931636 ID=FC931636; Name=FC931636; organism=Citrus clementina; type=EST; length=734bp
GACTGAAGAATCCAAAACTCTCTCAAGCCAAAGAAGCTGGAGCTGAAGAG
GTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGATGACTTCGAGG
CTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACATTGATGGT
GACGTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAGCCTTCCAC
TTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAGCACGTTG
AACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATATAGGGGA
ATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTGACCCCAC
AAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCG
CTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAG
GTTAACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAAGAGCTCAGTGAA
GGCAAACTCTCAGAAATCCGTTCCCAAAGCTTGCCTAAGCCCCGTGCAGC
CAAGTTTGAACCAAAACTTCAATTACTTGAACAACTCCGATCAGGATTAC
TACAACAATGTGAGTATTCTGGAGGAGAAACCACAGTGAATCAGTATGGA
TATATGGGCTCCTTCCCTGATGATGGAGAACTAGGATTCAACCCTTTGTG
CCACAGCTGATGATACTCCTGTGTACTTCACTCT
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