FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_LEIAM (Heat shock 70 kDa protein OS=Leishmania amazonensis GN=HSP70 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.420e-25
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +TI RARFEEL  DLFR  ++PVE+ L+DAKMDK +VHDVVLVGGSTRIPKVQ L+ DFF GKEL K+INPDE           IL+G  +++ + L
Sbjct:  298 ATINRARFEELCGDLFRSTIQPVERVLQDAKMDKRSVHDVVLVGGSTRIPKVQSLVSDFFGGKELNKSINPDEAVAYGAAVQAFILTGGKSKQTEGL 394          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.420e-25
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +TRARFEELN DLFRK M PV+K + DA ++K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  329 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 423          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 9.244e-25
Identity = 56/97 (57.73%), Postives = 71/97 (73.20%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK L D+K+DKS + ++VLVGGSTRIPKVQ+L+ DFFNGKE  ++INPDE           IL+G+ +   QDL
Sbjct:  293 TSITRARFEELCADLFRSTLEPVEKVLADSKLDKSQIDEIVLVGGSTRIPKVQKLVSDFFNGKEPNRSINPDEAVAYGAAVQAAILTGDQSSTTQDL 389          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_MIMIV (Heat shock 70 kDa protein homolog OS=Acanthamoeba polyphaga mimivirus GN=HSP70 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.244e-25
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            T+TRA+FEEL  DLFR  +EPVEK L D+K+DKS VH++VLVGGS+RIPKV+QLL +FFNGK+L + +NPDE           IL G+ +EK+Q++
Sbjct:  296 TLTRAKFEELCSDLFRAGLEPVEKVLLDSKLDKSQVHEIVLVGGSSRIPKVRQLLSNFFNGKKLNETVNPDEAVAYGAAIQAAILVGQTDEKLQNI 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_CLAHE (Heat shock 70 kDa protein OS=Cladosporium herbarum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.244e-25
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   12 TRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEK 281
            TRARFEE+  DLFR  MEP E+ LRD K+DKS+VH++VL GGSTRIPKVQ+L+ DFFNGKE CK+INPDE           ILSG+ + K
Sbjct:  296 TRARFEEVGQDLFRGNMEPGERTLRDDKIDKSSVHEIVLGGGSTRIPKVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILSGDTSSK 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.244e-25
Identity = 54/95 (56.84%), Postives = 70/95 (73.68%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +TRARFEELN DLFRK M PV+K + DA + K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  329 LTRARFEELNNDLFRKTMGPVKKAMDDAGLQKNQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPSKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 423          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: BIP4_TOBAC (Luminal-binding protein 4 OS=Nicotiana tabacum GN=BIP4 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.244e-25
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +TRARFEELN DLFRK M PV+K + DA ++K+ + ++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  330 LTRARFEELNNDLFRKTMGPVKKAMDDAGLEKTQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDI 424          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.577e-24
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            T+TRA+FEELN+DLF+K ++PVEK L DA ++K  + D VLVGGSTRIPKVQQLL+ FFNGK+  K INPDE           +LSGE  E V+D+
Sbjct:  327 TLTRAKFEELNLDLFKKTLKPVEKVLEDAGLEKKDIDDFVLVGGSTRIPKVQQLLESFFNGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDI 420          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.059e-24
Identity = 53/88 (60.23%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELN+DLFR  ++PV+K L DA M+K  VH++VLVGGSTRIPKVQQL++DFF GKE  + INPDE           +LSGE
Sbjct:  321 TLTRAKFEELNLDLFRSTLKPVQKVLEDADMNKKDVHEIVLVGGSTRIPKVQQLVKDFFGGKEPSRGINPDEAVAYGAAVQAGVLSGE 408          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_ASPNG (78 kDa glucose-regulated protein homolog OS=Aspergillus niger GN=bipA PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.059e-24
Identity = 54/88 (61.36%), Postives = 67/88 (76.14%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLF+K ++PVE+ L+DAK+ KS V D+VLVGGSTRIPKVQ LL++FF GK+  K INPDE           +LSGE
Sbjct:  340 TLTRAKFEELNMDLFKKTLKPVEQVLKDAKVKKSEVDDIVLVGGSTRIPKVQALLEEFFGGKKASKGINPDEAVAFGAAVQGGVLSGE 427          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_LEIAM5.420e-2559.79Heat shock 70 kDa protein OS=Leishmania amazonensi... [more]
BIP5_TOBAC5.420e-2556.84Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]
HSP74_YEAST9.244e-2557.73Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP70_MIMIV9.244e-2557.29Heat shock 70 kDa protein homolog OS=Acanthamoeba ... [more]
HSP70_CLAHE9.244e-2562.22Heat shock 70 kDa protein OS=Cladosporium herbarum... [more]
BIP_SOLLC9.244e-2556.84Luminal-binding protein OS=Solanum lycopersicum PE... [more]
BIP4_TOBAC9.244e-2556.84Luminal-binding protein 4 OS=Nicotiana tabacum GN=... [more]
GRP78_CANGA1.577e-2458.3378 kDa glucose-regulated protein homolog OS=Candid... [more]
HSP7C_DROME2.059e-2460.23Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_ASPNG2.059e-2461.3678 kDa glucose-regulated protein homolog OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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