FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: BIP2_DICDI (Luminal-binding protein 2 OS=Dictyostelium discoideum GN=bip2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.588e-24
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDE 221
            T+TRA+FEELNMDLF+K ++PV+K L DAK  KS +H+VVLVGGSTRIPK+QQLL+DFFNGKE  + ++PDE
Sbjct:  324 TLTRAKFEELNMDLFKKTLDPVKKVLEDAKFKKSQIHEVVLVGGSTRIPKIQQLLKDFFNGKEPNRGVHPDE 395          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.992e-24
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGN 275
            T+TRA+FEELNMDLFR  ++PV+K L DA M K+ VH++VLVGGSTRIPKVQQL++D+FNGKE  + INPDE           ++ G  N
Sbjct:  323 TLTRAKFEELNMDLFRATLKPVQKVLEDADMKKTDVHEIVLVGGSTRIPKVQQLIKDYFNGKEPSRGINPDEAVAYGAAVQAGVIGGVEN 412          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP72_PARLI (Heat shock 70 kDa protein II (Fragment) OS=Paracentrotus lividus GN=HSP70II PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.992e-24
Identity = 52/73 (71.23%), Postives = 64/73 (87.67%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDE 221
            +++TRARFEELN DLFR  +EPVE  LRDAK+DK  +H++VLVGGSTRIPK+Q+ LQDFF+GKEL K+INPDE
Sbjct:  295 TSVTRARFEELNSDLFRGTLEPVENALRDAKLDKEKIHEIVLVGGSTRIPKIQK-LQDFFHGKELNKSINPDE 366          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.992e-24
Identity = 54/96 (56.25%), Postives = 72/96 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            T+TRA+FEELN+DLF+K ++PVEK L+D+ ++K  V D+VLVGGSTRIPKVQQLL+ +F+GK+  K INPDE           +LSGE  E V+D+
Sbjct:  341 TLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDI 434          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.826e-24
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  ++PV+K L D+ + K  VH++VLVGGSTRIPKVQQL+++FFNGKE  + INPDE           ++SGE
Sbjct:  326 TLTRAKFEELNMDLFRATLKPVQKVLEDSDLKKDDVHEIVLVGGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGE 413          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.826e-24
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  ++PV+K L D+ + K  VH++VLVGGSTRIPKVQQL+++FFNGKE  + INPDE           ++SGE
Sbjct:  326 TLTRAKFEELNMDLFRATLKPVQKVLEDSDLKKDDVHEIVLVGGSTRIPKVQQLIKEFFNGKEPSRGINPDEAVAYGAAVQGGVISGE 413          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 54/96 (56.25%), Postives = 70/96 (72.92%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            T+TRA+FEELN+ LF+K ++PVEK L+D+ + K  + D+VLVGGSTRIPKVQQLL+ FFNGK+  K INPDE           +LSGE  E V+D+
Sbjct:  342 TLTRAKFEELNLALFKKTLKPVEKVLKDSGLQKEDIDDIVLVGGSTRIPKVQQLLEKFFNGKKASKGINPDEAVAYGAAVQAGVLSGE--EGVEDI 435          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP75_KLUMA (Heat shock protein SSB OS=Kluyveromyces marxianus GN=SSB PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEG-NEKVQDL 293
            +TITRARFE++N  LF+  +EPVE+ L+DAK+ KS + +VVLVGGSTRIPKVQ+LL DFF+GK+L K+INPDE           IL+G+  +++ +DL
Sbjct:  298 ATITRARFEDINAALFKSTLEPVEQVLKDAKISKSQIDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDL 395          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 52/96 (54.17%), Postives = 72/96 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            T+TRA+FEELN+DLF++ ++PVE+ L+D+ + K  VHD+VLVGGSTRIPKVQ+LL+ FF+GK+  K INPDE           +LSGE  + V+D+
Sbjct:  328 TLTRAKFEELNIDLFKRTLKPVEQVLKDSGVKKEDVHDIVLVGGSTRIPKVQELLEKFFDGKKASKGINPDEAVAYGAAVQAGVLSGE--DGVEDI 421          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  M+PV+K L D+ + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+
Sbjct:  321 TLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD 408          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIP2_DICDI4.588e-2469.44Luminal-binding protein 2 OS=Dictyostelium discoid... [more]
HSP7D_CAEEL5.992e-2457.78Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
HSP72_PARLI5.992e-2471.23Heat shock 70 kDa protein II (Fragment) OS=Paracen... [more]
GRP78_YEAST5.992e-2456.2578 kDa glucose-regulated protein homolog OS=Saccha... [more]
HSP7C_CAEEL7.826e-2457.95Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
HSP7C_CAEBR7.826e-2457.95Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
GRP78_KLULA1.335e-2356.2578 kDa glucose-regulated protein homolog OS=Kluyve... [more]
HSP75_KLUMA2.974e-2355.10Heat shock protein SSB OS=Kluyveromyces marxianus ... [more]
GRP78_YARLI2.974e-2354.1778 kDa glucose-regulated protein homolog OS=Yarrow... [more]
GRP78_SPETR2.974e-2356.8278 kDa glucose-regulated protein OS=Spermophilus t... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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