FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  M+PV+K L D+ + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+
Sbjct:  321 TLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD 408          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  M+PV+K L D+ + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+
Sbjct:  321 TLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD 408          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  M+PV+K L D+ + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+
Sbjct:  322 TLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD 409          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  M+PV+K L D+ + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+
Sbjct:  321 TLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD 408          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  M+PV+K L D+ + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+
Sbjct:  321 TLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD 408          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  M+PV+K L D+ + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+
Sbjct:  319 TLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD 406          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEELNMDLFR  M+PV+K L D+ + KS + ++VLVGGSTRIPK+QQL+++FFNGKE  + INPDE           +LSG+
Sbjct:  322 TLTRAKFEELNMDLFRSTMKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKIQQLVKEFFNGKEPSRGINPDEAVAYGAAVQAGVLSGD 409          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.884e-23
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEG-NEKVQDL 293
            S++TRARFE+LN  LF+  +EPVE+ L+DAK+ KS + +VVLVGGSTRIPKVQ+LL DFF+GK+L K+INPDE           IL+G+  +++ +DL
Sbjct:  298 SSLTRARFEDLNAALFKSTLEPVEQVLKDAKISKSQIDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDL 395          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.884e-23
Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEG-NEKVQDL 293
            S++TRARFE+LN  LF+  +EPVE+ L+DAK+ KS + +VVLVGGSTRIPKVQ+LL DFF+GK+L K+INPDE           IL+G+  +++ +DL
Sbjct:  298 SSLTRARFEDLNAALFKSTLEPVEQVLKDAKISKSQIDEVVLVGGSTRIPKVQKLLSDFFDGKQLEKSINPDEAVAYGAAVQGAILTGQSTSDETKDL 395          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.073e-23
Identity = 52/96 (54.17%), Postives = 71/96 (73.96%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +++RA+FEELNMDLF+K ++PV++ L DAKM    + DVV VGGSTRIPKVQ+L+++FFNGK++ K INPDE           +LSGE  E V+D+
Sbjct:  331 SLSRAKFEELNMDLFKKTLKPVQQVLDDAKMKPDEIDDVVFVGGSTRIPKVQELIENFFNGKKISKGINPDEAVAFGAAVQGGVLSGE--EGVEDI 424          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_RAT2.974e-2356.8278 kDa glucose-regulated protein OS=Rattus norvegi... [more]
GRP78_PONAB2.974e-2356.8278 kDa glucose-regulated protein OS=Pongo abelii G... [more]
GRP78_MOUSE2.974e-2356.8278 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU2.974e-2356.8278 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN2.974e-2356.8278 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_CHICK2.974e-2356.8278 kDa glucose-regulated protein OS=Gallus gallus ... [more]
GRP78_BOVIN2.974e-2356.8278 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
HSP76_YEAST3.884e-2355.10Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST3.884e-2355.10Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
GRP78_PICAN5.073e-2354.1778 kDa glucose-regulated protein homolog OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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