FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_CHLCH (Chaperone protein dnaK OS=Chlorobium chlorochromatii (strain CaD3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.747e-15
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE ++ DLF K ++P  + +++AK++   + +VVLVGGSTRIPK+Q L+++FF GKE  K++NPDE           +L G+
Sbjct:  293 LTRAKFEAISADLFNKVLDPCRRAVKNAKIEMREIDEVVLVGGSTRIPKIQALVKEFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD 378          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_NAUPA (Chaperone protein dnaK OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=dnaK PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.282e-15
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE +  DL ++ +  ++  L DA + K  + ++V+VGGSTRIPKVQ+L+ ++FNGK+L K++NPDE           +L G+
Sbjct:  294 LTRAKFEAMIDDLLQETLRHIDTALEDAGLSKDEIDEIVMVGGSTRIPKVQELVSNYFNGKKLNKSVNPDEVVALGAAIQAGVLKGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PROVI (Chaperone protein dnaK OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaK PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE +  DLF K +EP ++ ++++K+    + ++VLVGGSTRIPKVQ L++DFF GKE  K++NPDE           +L G+
Sbjct:  293 LTRAKFEGICADLFAKILEPCQRAVKNSKVPMKEIDEIVLVGGSTRIPKVQALVKDFF-GKEPNKSVNPDEVVAVGAAIQGGVLKGD 378          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_DEIGD (Chaperone protein dnaK OS=Deinococcus geothermalis (strain DSM 11300) GN=dnaK PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGN 275
            T++RA+FEEL  DL R+  +PVE+ L DAK+  S + +V+LVGGSTRIP V++++++   GKE  +++NPDE           I+ G+ N
Sbjct:  293 TLSRAKFEELTADLLRRVRQPVEQALADAKLSASDIDEVILVGGSTRIPAVKRIVKE-ITGKEPNESVNPDEAVALGAAVQAGIIQGDAN 381          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_ANAMM (Chaperone protein dnaK OS=Anaplasma marginale (strain St. Maries) GN=dnaK PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.981e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKM-DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  +L  + +EP +K L DA + D S + +VVLVGG TR+PKV Q ++DFF GKE CK +NPDE           IL+G+
Sbjct:  297 LTRAKFEGLVSELIERTIEPCKKALDDAGIKDTSKIDEVVLVGGMTRMPKVIQRVKDFFGGKEPCKGVNPDEVVAIGAAIQGGILTGD 384          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_CHLP8 (Chaperone protein dnaK OS=Chlorobaculum parvum (strain NCIB 8327) GN=dnaK PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE ++  LF K +EP  + L+++K+D   + +VVLVGGS+RIPKVQ L+++FF GKE  K++NPDE           +L G+
Sbjct:  293 LTRAKFEAMSATLFDKVLEPCRRALKNSKLDMKEIDEVVLVGGSSRIPKVQALVKEFF-GKEPNKSVNPDEVVAIGAAIQGGVLQGD 378          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BACFR (Chaperone protein dnaK OS=Bacteroides fragilis GN=dnaK PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FE L  +L + C+EP +K ++DA +  S + +V+LVGGS+RIP VQ+L++DFF GK   K +NPDE           +L+ E
Sbjct:  293 TLTRAKFESLAHNLIQACLEPCKKAMQDAGLSNSDIDEVILVGGSSRIPAVQKLVEDFF-GKTPSKGVNPDEVVAVGAAVQGAVLTDE 379          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BACFN (Chaperone protein dnaK OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dnaK PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FE L  +L + C+EP +K ++DA +  S + +V+LVGGS+RIP VQ+L++DFF GK   K +NPDE           +L+ E
Sbjct:  293 TLTRAKFESLAHNLIQACLEPCKKAMQDAGLSNSDIDEVILVGGSSRIPAVQKLVEDFF-GKTPSKGVNPDEVVAVGAAVQGAVLTDE 379          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_DEIPR (Chaperone protein dnaK (Fragment) OS=Deinococcus proteolyticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.084e-15
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGN 275
            T++RA+FEEL  DL ++  +PVE+ +RDA +  S +++V+LVGGSTRIP V+++++D   GKE  +++NPDE           I+ G+ N
Sbjct:  282 TLSRAKFEELTADLLKRVRQPVEQAMRDAGVSSSDLNEVILVGGSTRIPAVKRIVKD-LTGKEPNESVNPDEAVGLGAAVQAGIIQGDSN 370          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_CLOTH (Chaperone protein dnaK OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaK PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.640e-15
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEEL  DL  K MEP  + L D+ +    +  ++LVGGSTRIP VQ+ ++ FF GKE  K INPDE           +L+GE
Sbjct:  270 TLTRAKFEELTADLVEKTMEPTRRALEDSGLTPDKIDKILLVGGSTRIPAVQEAVRKFF-GKEPFKGINPDECVAIGAAIQAGVLTGE 356          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_CHLCH1.747e-1543.68Chaperone protein dnaK OS=Chlorobium chlorochromat... [more]
DNAK_NAUPA2.282e-1541.38Chaperone protein dnaK OS=Nautilia profundicola (s... [more]
DNAK_PROVI2.981e-1544.83Chaperone protein dnaK OS=Prosthecochloris vibriof... [more]
DNAK_DEIGD2.981e-1543.33Chaperone protein dnaK OS=Deinococcus geothermalis... [more]
DNAK_ANAMM2.981e-1547.73Chaperone protein dnaK OS=Anaplasma marginale (str... [more]
DNAK_CHLP83.893e-1544.83Chaperone protein dnaK OS=Chlorobaculum parvum (st... [more]
DNAK_BACFR3.893e-1544.32Chaperone protein dnaK OS=Bacteroides fragilis GN=... [more]
DNAK_BACFN3.893e-1544.32Chaperone protein dnaK OS=Bacteroides fragilis (st... [more]
DNAK_DEIPR5.084e-1542.22Chaperone protein dnaK (Fragment) OS=Deinococcus p... [more]
DNAK_CLOTH6.640e-1546.59Chaperone protein dnaK OS=Clostridium thermocellum... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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