FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.272e-31
Identity = 66/97 (68.04%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  ++PVEK LRDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL K+INPDE           ILSG+ +E VQDL
Sbjct:  295 TSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 2.272e-31
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  ++PVEK LRDAKMDK+ VHD+VLVGGSTRIPK+Q+LLQDFFNGKEL K+INPDE           ILSG+ +E VQDL
Sbjct:  295 TSITRARFEELNADLFRGTLDPVEKSLRDAKMDKAQVHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.875e-31
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  ++PVEK LRDAKMDK  +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL K+INPDE           ILSG+ +E VQDL
Sbjct:  295 TSITRARFEELNADLFRGTLDPVEKSLRDAKMDKGQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.061e-31
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  ++PVEK LRDAKMDK+ +HD+VLVGGSTRIPK+Q+LLQD+FNGKEL K+INPDE           ILSG+ +E VQDL
Sbjct:  295 TSITRARFEELNADLFRGTLDPVEKALRDAKMDKAQIHDIVLVGGSTRIPKIQKLLQDYFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.610e-31
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFE+LN DLFR  ++PVEK LRDAK+DKS +HD+VLVGGSTRIPK+Q+LLQDFFNGKEL K+INPDE           ILSG+ +E VQDL
Sbjct:  295 TSITRARFEKLNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 1.127e-30
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  M+PVEK LRDAK+DKS +HD+VLVGGSTRIPKVQ+LLQD FNGKEL K+INPDE           IL G+ +++VQDL
Sbjct:  295 TSITRARFEELNADLFRSTMDPVEKALRDAKLDKSVIHDIVLVGGSTRIPKVQRLLQDLFNGKELNKSINPDEAVAYGAAVQAAILHGDKSQEVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.512e-30
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +++TRARFEELN DLFR  MEPV K LRDAKMDK  +HD+VLVGGSTRIPKVQ+LLQDFFNGKEL K+INPDE           IL G+ +E VQDL
Sbjct:  295 TSVTRARFEELNGDLFRGTMEPVAKALRDAKMDKGQIHDIVLVGGSTRIPKVQRLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEAVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.512e-30
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEE+  DLFR  +EPVEK LRDAKMDK+ +HDVVLVGGSTRIPKVQ+LLQDFFNG+EL K+INPDE           ILSG+ +E VQDL
Sbjct:  297 TSITRARFEEMCSDLFRGTLEPVEKALRDAKMDKAQIHDVVLVGGSTRIPKVQKLLQDFFNGRELNKSINPDEAVAYGAAIQAAILSGDKSENVQDL 393          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.280e-30
Identity = 66/97 (68.04%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK LRDAK+DK+ +HDVVLVGGSTRIPKVQ+LLQDFFNGKEL K+INPDE           +L G+  EKVQDL
Sbjct:  297 TSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDVVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAVLMGDKCEKVQDL 393          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.544e-30
Identity = 66/97 (68.04%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            + ITRARFEEL  DLFR  M+PVEK LRDAKMDK+ VHD+VLVGGSTRIPKVQ+LL DFF+GKEL K+INPDE           ILSG+ +E VQDL
Sbjct:  294 TNITRARFEELCADLFRSTMDPVEKALRDAKMDKAQVHDIVLVGGSTRIPKVQKLLSDFFSGKELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDL 390          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7C_BOVIN2.272e-3168.04Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HSP70_ONCMY2.272e-3169.07Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP7C_ORYLA3.875e-3168.04Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]
HSP7C_DANRE5.061e-3167.01Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]
HSP7C_CHICK6.610e-3167.01Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP7D_DROME1.127e-3067.01Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP7A_DROME2.512e-3068.04Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]
HSP70_ONCTS2.512e-3068.04Heat shock 70 kDa protein OS=Oncorhynchus tschawyt... [more]
HSP76_HUMAN3.280e-3068.04Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HSP70_BRUMA9.544e-3068.04Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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