FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.126e-29
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK LRDAK+DK+ +HDVVLVGGSTRIP+VQ+LLQDFFNGKEL K+INPDE           +L G+  EKV+DL
Sbjct:  297 TSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDVVLVGGSTRIPRVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAVLMGDKCEKVRDL 393          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.126e-29
Identity = 64/97 (65.98%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +++TRARFEEL  DLFR  +EPVEK LRDAKMDK  +HDVVLVGGSTRIPK+Q+LLQDFFNG+EL K+INPDE           ILSG+ +  VQDL
Sbjct:  297 TSVTRARFEELCSDLFRGTLEPVEKALRDAKMDKGQIHDVVLVGGSTRIPKIQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAILSGDTSGNVQDL 393          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.777e-29
Identity = 66/97 (68.04%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            + ITRARFEEL  DLFR  M+PVEK LRDAKMDKS VHD+VLVGGSTRIPKVQ+LL D F+GKEL K+INPDE           ILSG+ +E VQDL
Sbjct:  296 TNITRARFEELCADLFRSTMDPVEKSLRDAKMDKSQVHDIVLVGGSTRIPKVQKLLSDLFSGKELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDL 392          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_XENLA (Heat shock 70 kDa protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.777e-29
Identity = 64/97 (65.98%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            + ITRARFEEL  DLFR  +EPVEK LRDAK+DKS +H++VLVGGSTRIPKVQ+LLQDFFNG+EL K+INPDE           IL G+ +E VQDL
Sbjct:  296 TAITRARFEELCSDLFRGTLEPVEKALRDAKLDKSQIHEIVLVGGSTRIPKVQKLLQDFFNGRELNKSINPDEAVAYGAAVQAAILMGDKSENVQDL 392          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.777e-29
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  +EPVEK LRDAK+DK  + ++VLVGGSTRIPK+Q+LLQDFFNGKEL K+INPDE           IL G+ +E VQDL
Sbjct:  298 TSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILMGDKSENVQDL 394          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.777e-29
Identity = 62/97 (63.92%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR C++PV+K L+D+K+DK T+H++VLVGGSTRIPKVQQLLQD FNGKEL K+INPDE           ILS EG  KV D+
Sbjct:  294 TSITRARFEELCADLFRGCLDPVDKVLKDSKLDKKTIHEIVLVGGSTRIPKVQQLLQDHFNGKELNKSINPDEAVAYGAAVQAAILSNEGGAKVADI 390          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.777e-29
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK LRDAKMDK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L K+INPDE           IL G+ +E VQDL
Sbjct:  295 TSITRARFEELCSDLFRGTLEPVEKALRDAKMDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 2.777e-29
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK LRDAKMDK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L K+INPDE           IL G+ +E VQDL
Sbjct:  295 TSITRARFEELCSDLFRGTLEPVEKALRDAKMDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.627e-29
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  +EPVEK LRDAK+DK  + ++VLVGGSTRIPK+Q+LLQDFFNGKEL K+INPDE           IL G+ +E VQDL
Sbjct:  298 TSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDL 394          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.627e-29
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  +EPVEK LRDAK+DK  + ++VLVGGSTRIPK+Q+LLQDFFNGKEL K+INPDE           IL G+ +E VQDL
Sbjct:  298 TSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGDKSENVQDL 394          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP76_SAGOE2.126e-2965.98Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN... [more]
HSP71_ORYLA2.126e-2965.98Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP7A_CAEEL2.777e-2968.04Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]
HSP70_XENLA2.777e-2965.98Heat shock 70 kDa protein OS=Xenopus laevis PE=2 S... [more]
HSP70_CHICK2.777e-2964.95Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HS7C2_DICDI2.777e-2963.92Heat shock cognate 70 kDa protein 2 OS=Dictyosteli... [more]
HS71B_MOUSE2.777e-2965.98Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE2.777e-2965.98Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP72_RAT3.627e-2964.95Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE3.627e-2964.95Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
back to top