FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL +K +EP  K L+DA +    + +VVLVGG TR+PKVQ++++  F GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEISEVVLVGGMTRMPKVQEVVKQLF-GKEPHKGVNPDEVVAIGAAIQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPT (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain TIE-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL +K +EP  K L+DA +    + +VVLVGG TR+PKVQ++++  F GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEISEVVLVGGMTRMPKVQEVVKQLF-GKEPHKGVNPDEVVAIGAAIQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL +K +EP  K L+DA +    + +VVLVGG TR+PKVQ++++  F GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEISEVVLVGGMTRMPKVQEVVKQLF-GKEPHKGVNPDEVVAIGAAIQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PSEU5 (Chaperone protein dnaK OS=Pseudomonas stutzeri (strain A1501) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            I+RA+ E L  DL  + +EP    L+DA +D S ++DV+LVGG TR+P VQQ + +FF GKE  K++NPDE           +L+G+
Sbjct:  300 ISRAKLESLVEDLVERTIEPCRIALKDAGIDVSKINDVILVGGQTRMPLVQQKVAEFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPW (Chaperone protein dnaK OS=Pseudomonas putida (strain W619) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            I+RA+ E L  DL  + +EP    L+DA +D S + DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +L+G+
Sbjct:  300 ISRAKLESLVEDLVNRTIEPCRIALKDAGIDASKIDDVILVGGQTRMPLVQKAVADFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPK (Chaperone protein dnaK OS=Pseudomonas putida (strain KT2440) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            I+RA+ E L  DL ++ +EP    L+DA +D S + DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +L+G+
Sbjct:  300 ISRAKLESLVEDLVKRTIEPCRIALKDAGIDASKIDDVILVGGQTRMPLVQKEVADFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PSEP1 (Chaperone protein dnaK OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            I+RA+ E L  DL ++ +EP    L+DA +D S + DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +L+G+
Sbjct:  300 ISRAKLESLVEDLVKRTIEPCRIALKDAGIDASKIDDVILVGGQTRMPLVQKEVADFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PSEF5 (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            I+RA+ E L  DL ++ +EP    L+DA +D  +++DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +L+G+
Sbjct:  300 ISRAKLESLVEDLVQRTIEPCRIALKDAGIDVGSINDVILVGGQTRMPLVQKTVTDFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_NEIM0 (Chaperone protein dnaK OS=Neisseria meningitidis serogroup C (strain 053442) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSG 266
            ITRA+FE L  DL  + +EP    L+DA +    + DV+LVGG +R+PKVQ+ ++ FF GKE  K++NPDE           +LSG
Sbjct:  301 ITRAKFESLVEDLIARSIEPCRTALKDAGLSTGDIDDVILVGGQSRMPKVQEAVKAFF-GKEPRKDVNPDEAVAVGAAIQGEVLSG 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_KINRD (Chaperone protein dnaK OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=dnaK PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FE++  DL  +  +P    +RDA +  + +H VVLVGGSTR+P V  ++++   GKE  K +NPDE           +L GE
Sbjct:  276 TLTRAQFEQMTQDLLDRTKKPFHDVIRDADVKLADIHHVVLVGGSTRMPAVTGVVKELLGGKEPNKGVNPDEVVAIGAALQAGVLKGE 363          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOS74.759e-1343.68Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]
DNAK_RHOPT4.759e-1343.68Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPA4.759e-1343.68Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_PSEU54.759e-1343.68Chaperone protein dnaK OS=Pseudomonas stutzeri (st... [more]
DNAK_PSEPW4.759e-1343.68Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_PSEPK4.759e-1343.68Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_PSEP14.759e-1343.68Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_PSEF54.759e-1342.53Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_NEIM04.759e-1344.19Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_KINRD4.759e-1339.77Chaperone protein dnaK OS=Kineococcus radiotoleran... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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