FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPB (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB18) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL +K +EP  K L+DA +    + +VVLVGG TR+PKVQ++++  F GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLF-GKEPHKGVNPDEVVAIGAAIQAGVLQGD 380
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP5 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisA53) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL +K +EP  K L+DA +    + +VVLVGG TR+PKVQ++++  F GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLF-GKEPHKGVNPDEVVAIGAAIQAGVLQGD 380
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP2 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain HaA2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL +K +EP  K L+DA +    + +VVLVGG TR+PKVQ++++  F GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLF-GKEPHKGVNPDEVVAIGAAIQAGVLQGD 380
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PSEHT (Chaperone protein dnaK OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 3 
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  K +EP+++ L DA +  S ++D++LVGG TR+P VQ+ + +FF GKE  K++NPDE           +L+G+
Sbjct:  300 LTRAKLESLVEDLVTKSIEPLKRALADADLSVSDINDIILVGGQTRMPLVQKTVAEFF-GKEPRKDVNPDEAVAVGAAIQGGVLAGD 385
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PSEE4 (Chaperone protein dnaK OS=Pseudomonas entomophila (strain L48) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            I+RA+ E L  DL  + +EP    L+DA +D S + DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +L+G+
Sbjct:  300 ISRAKLEALVEDLVTRTIEPCRIALKDAGIDASKIDDVILVGGQTRMPMVQKAVADFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD 385
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_OCEIH (Chaperone protein dnaK OS=Oceanobacillus iheyensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 3 
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T++RA+F+EL+ DL  + M+P  K L DA + KS +  V+LVGGSTRIP VQ+ ++    G++  K +NPDE           +L G+
Sbjct:  269 TMSRAKFDELSSDLVERTMQPTRKALSDASLSKSDIDKVILVGGSTRIPAVQEAIKKEL-GQDPSKGVNPDEVVALGAAIQGGVLQGD 355
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_NITWN (Chaperone protein dnaK OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL +K +EP  K L+DA +    + +VVLVGG TR+PKVQ++++  F GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLF-GKEPHKGVNPDEVVAIGAAIQAGVLQGD 380
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_NITHX (Chaperone protein dnaK OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3 
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL +K +EP  K L+DA +    + +VVLVGG TR+PKVQ++++  F GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLVQKTIEPCRKALKDAGLTAGEIGEVVLVGGMTRMPKVQEVVKQLF-GKEPHKGVNPDEVVAIGAAIQAGVLQGD 380
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_NEIMB (Chaperone protein dnaK OS=Neisseria meningitidis serogroup B GN=dnaK PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 3 
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSG 266
            ITRA+FE L  DL  + +EP +  L+DA +    + DV+LVGG +R+PKVQ+ ++ FF GKE  K++NPDE           +LSG
Sbjct:  301 ITRAKFESLVEDLITRSIEPCKIALKDAGLSTGDIDDVILVGGQSRMPKVQEAVKAFF-GKEPRKDVNPDEAVAVGAAIQGEVLSG 385
[Close]
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_MYCGA (Chaperone protein dnaK OS=Mycoplasma gallisepticum GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = 3 
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T++RA+FEEL  DL  +   P+   L++AK+D S V +++LVGGSTR+P VQ+L++     K   + INPDE           +L G+
Sbjct:  280 TLSRAKFEELTKDLLERTRNPIADVLKEAKVDPSQVDEILLVGGSTRMPAVQKLVESMIPNKAPNRTINPDEVVAIGAAVQGGVLRGD 367
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOPB6.215e-1343.68Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOP56.215e-1343.68Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOP26.215e-1343.68Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_PSEHT6.215e-1341.38Chaperone protein dnaK OS=Pseudoalteromonas halopl... [more]
DNAK_PSEE46.215e-1343.68Chaperone protein dnaK OS=Pseudomonas entomophila ... [more]
DNAK_OCEIH6.215e-1340.91Chaperone protein dnaK OS=Oceanobacillus iheyensis... [more]
DNAK_NITWN6.215e-1343.68Chaperone protein dnaK OS=Nitrobacter winogradskyi... [more]
DNAK_NITHX6.215e-1343.68Chaperone protein dnaK OS=Nitrobacter hamburgensis... [more]
DNAK_NEIMB6.215e-1344.19Chaperone protein dnaK OS=Neisseria meningitidis s... [more]
DNAK_MYCGA6.215e-1339.77Chaperone protein dnaK OS=Mycoplasma gallisepticum... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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