FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_METS4 (Chaperone protein dnaK OS=Methylobacterium sp. (strain 4-46) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ++RA+FE L  DL ++ +EP  K L+DA +  S + +VVLVGG TR+PK+Q +++ FF GKE  K +NPDE           +L G+
Sbjct:  295 LSRAKFESLVDDLIQRTIEPCRKALKDAGVAASEIDEVVLVGGMTRMPKIQDVVKTFF-GKEPHKGVNPDEVVAIGAAVQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_MARMM (Chaperone protein dnaK OS=Maricaulis maris (strain MCS10) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ++RA+ E L  DL ++ +EP +K L+DA +  S + D+VLVGG TR+PKVQ+ ++ FF GK+  K +NPDE           +L G+
Sbjct:  295 LSRAKLEALVEDLVKRTLEPCKKALKDAGLSPSDIDDIVLVGGMTRMPKVQEAVKGFF-GKDPHKGVNPDEVVAMGAAIQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_LEPIN (Chaperone protein dnaK OS=Leptospira interrogans GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+F++L   L  +   P E  LRDA +  S +++V+LVGGS RIP VQ+L++  F GKE  K++NPDE           +L+GE
Sbjct:  295 TLTRAKFDQLTKSLVDRTRIPCENALRDAGLKASDINEVILVGGSIRIPAVQELVKQVF-GKEPNKSVNPDEVVAIGAAIQGGVLAGE 381          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_LEPIC (Chaperone protein dnaK OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/88 (43.18%), Postives = 55/88 (62.50%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+F++L   L  +   P E  LRDA +  S +++V+LVGGS RIP VQ+L++  F GKE  K++NPDE           +L+GE
Sbjct:  295 TLTRAKFDQLTKSLVDRTRIPCENALRDAGLKASDINEVILVGGSIRIPAVQELVKQVF-GKEPNKSVNPDEVVAIGAAIQGGVLAGE 381          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_CHLFF (Chaperone protein dnaK OS=Chlamydophila felis (strain Fe/C-56) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA FE+L  +L  +   P  K L DAK+  S + DV+LVGG +R+P VQ++++D F GKE  K +NPDE           +L GE
Sbjct:  297 TLTRAHFEKLASNLIERTKAPCIKALADAKLSASDIDDVLLVGGMSRMPAVQEIVKDIF-GKEPNKGVNPDEVVAIGAAIQGGVLGGE 383          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_CAUCR (Chaperone protein dnaK OS=Caulobacter crescentus GN=dnaK PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ++RA+ E L  DL  + + P E+ L+DA + KS + +V+LVGG +R+PKVQQ +QDFF G+E  K +NPDE           +L G+
Sbjct:  295 LSRAKLEALVDDLIARTIGPCEQALKDAGLKKSDIDEVILVGGMSRMPKVQQAVQDFF-GREPHKGVNPDEVVALGAAVQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BUCAT (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP++  L+DA +  + ++DV+LVGG TR+P VQ  + DFF GKE  K++NPDE           +LSG+
Sbjct:  300 VTRAKLESLVEDLILRSIEPLKVALKDAGLSVTDINDVILVGGQTRMPMVQSKVADFF-GKEPRKDVNPDEAVAVGAAVQGGVLSGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BUCAI (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP++  L+DA +  + ++DV+LVGG TR+P VQ  + DFF GKE  K++NPDE           +LSG+
Sbjct:  300 VTRAKLESLVEDLILRSIEPLKVALKDAGLSVTDINDVILVGGQTRMPMVQSKVADFF-GKEPRKDVNPDEAVAVGAAVQGGVLSGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BUCA5 (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP++  L+DA +  + ++DV+LVGG TR+P VQ  + DFF GKE  K++NPDE           +LSG+
Sbjct:  300 VTRAKLESLVEDLILRSIEPLKVALKDAGLSVTDINDVILVGGQTRMPMVQSKVADFF-GKEPRKDVNPDEAVAVGAAVQGGVLSGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BIFA0 (Chaperone protein dnaK OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA FEE+  DL  +C  P    L DA +  S +  V+LVGGSTR+P V++L+++   GKE  +++NPDE           ++ G+
Sbjct:  277 TLTRAHFEEMTKDLLDRCRTPFNNVLADAGISVSQIDHVILVGGSTRMPAVKELVKELDGGKEANQSVNPDEVVAIGAAVQSGVIKGD 364          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_METS46.215e-1342.53Chaperone protein dnaK OS=Methylobacterium sp. (st... [more]
DNAK_MARMM6.215e-1341.38Chaperone protein dnaK OS=Maricaulis maris (strain... [more]
DNAK_LEPIN6.215e-1343.18Chaperone protein dnaK OS=Leptospira interrogans G... [more]
DNAK_LEPIC6.215e-1343.18Chaperone protein dnaK OS=Leptospira interrogans s... [more]
DNAK_CHLFF6.215e-1343.18Chaperone protein dnaK OS=Chlamydophila felis (str... [more]
DNAK_CAUCR6.215e-1342.53Chaperone protein dnaK OS=Caulobacter crescentus G... [more]
DNAK_BUCAT6.215e-1342.53Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BUCAI6.215e-1342.53Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BUCA56.215e-1342.53Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BIFA06.215e-1338.64Chaperone protein dnaK OS=Bifidobacterium animalis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
back to top