FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BARQU (Chaperone protein dnaK OS=Bartonella quintana GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL ++ +EP +  L+DA +    + +VVLVGG TR+PK+Q+++Q FF GK+  K +NPDE           +L G+
Sbjct:  295 LTRAKFESLVDDLVQRTIEPCKAALKDAGLKAGEIDEVVLVGGMTRMPKIQEVVQSFF-GKDPHKGVNPDEVVAMGAAIQGGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BARBK (Chaperone protein dnaK OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL ++ +EP +  L+DA +    + +VVLVGG TR+PK+Q+++Q+FF GK+  K +NPDE           +L G+
Sbjct:  295 LTRAKFESLVDDLVQRTIEPCKAALKDAGLRAGEIDEVVLVGGMTRMPKIQEVVQNFF-GKDPHKGVNPDEVVAMGAAIQGGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BACA2 (Chaperone protein dnaK OS=Bacillus amyloliquefaciens (strain FZB42) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKV 284
            T+TRA+FEEL+  L  + M PV + L+DA +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+  + V
Sbjct:  269 TLTRAKFEELSAHLVERTMAPVRQALQDADLSASEIDKVILVGGSTRIPAVQEAIKK-ETGKEAHKGVNPDEVVALGAAIQGGVITGDVKDVV 360          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_ACIC5 (Chaperone protein dnaK OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E+L  D+ ++ +EP +K + DA +D S + +VVLVGG TR+P++Q++++  F GKE  + +NPDE           +L+GE
Sbjct:  294 LTRAKLEQLVEDILQRSIEPCKKAMADAGVDASKIDEVVLVGGQTRMPRIQEIVKQLF-GKEPHRGVNPDEVVAIGAAVQAGVLAGE 379          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_ACIAD (Chaperone protein dnaK OS=Acinetobacter sp. (strain ADP1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    L+DA +  S + DV+LVGG +R+P VQQ +Q+FF GKE  K++NPDE           +LSG+
Sbjct:  299 VTRAKLEGLVADLVARTIEPCRIALKDAGLSTSDISDVILVGGQSRMPMVQQKVQEFF-GKEPRKDVNPDEAVAIGAAIQGAVLSGD 384          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK3_SYNE7 (Chaperone protein dnaK3 OS=Synechococcus elongatus (strain PCC 7942) GN=dnaK3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TR+ FE L  DL  + M P+ + L+DA++    + +VVLVGGSTR+P VQQL++    G+E  +N+NPDE           IL+GE
Sbjct:  295 LTRSEFEALCEDLLERMMRPLRRALKDARLQPQDIDEVVLVGGSTRMPMVQQLVRSLI-GREPNQNVNPDEVVAIGAAIQAGILAGE 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMM (Chaperone protein dnaK2 OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEEL   L  +C  PVE+ L+DAK+    + ++V+VGGS+R+P VQ+L++    GK+  + +NPDE           +L+GE
Sbjct:  293 TLTRAKFEELASKLIDRCRVPVEQALKDAKLSSGELDEIVMVGGSSRMPAVQELVKR-VTGKDPNQTVNPDEVVAVGAAIQGGVLAGE 379          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK1_SYNP6 (Chaperone protein dnaK 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TR+ FE L  DL  + M P+ + L+DA++    + +VVLVGGSTR+P VQQL++    G+E  +N+NPDE           IL+GE
Sbjct:  295 LTRSEFEALCEDLLERMMRPLRRALKDARLQPQDIDEVVLVGGSTRMPMVQQLVRSLI-GREPNQNVNPDEVVAIGAAIQAGILAGE 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_THEM4 (Chaperone protein dnaK OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +TR+ FE L  DL     +P+E+ L DAK+    + +++LVGG TR+P +Q  +++ F GKE  K +NPDE           IL+GE   + +D+
Sbjct:  277 LTRSMFESLTRDLVEMTRKPIEQALSDAKLKPEDIDEIILVGGMTRVPMIQNFIKEIF-GKEPNKRVNPDEAVAMGAAIQAAILAGEEGAQGKDI 370          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB9 (Chaperone protein dnaK OS=Shewanella baltica (strain OS195) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ITRA+ E L  DL  + +EP++  L DA +  + +++V+LVGG TR+PKVQ+ + +FF GKE  K++NPDE           +LSG+
Sbjct:  299 ITRAKLESLVEDLIIRTLEPLKVALADADLSVTDINEVILVGGQTRMPKVQEAVTNFF-GKEPRKDVNPDEAVAVGAAIQAGVLSGD 384          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BARQU6.215e-1341.38Chaperone protein dnaK OS=Bartonella quintana GN=d... [more]
DNAK_BARBK6.215e-1341.38Chaperone protein dnaK OS=Bartonella bacilliformis... [more]
DNAK_BACA26.215e-1340.86Chaperone protein dnaK OS=Bacillus amyloliquefacie... [more]
DNAK_ACIC56.215e-1339.08Chaperone protein dnaK OS=Acidobacterium capsulatu... [more]
DNAK_ACIAD6.215e-1343.68Chaperone protein dnaK OS=Acinetobacter sp. (strai... [more]
DNAK3_SYNE76.215e-1342.53Chaperone protein dnaK3 OS=Synechococcus elongatus... [more]
DNAK2_PROMM6.215e-1340.91Chaperone protein dnaK2 OS=Prochlorococcus marinus... [more]
DNAK1_SYNP66.215e-1342.53Chaperone protein dnaK 1 OS=Synechococcus sp. (str... [more]
DNAK_THEM48.117e-1336.84Chaperone protein dnaK OS=Thermosipho melanesiensi... [more]
DNAK_SHEB98.117e-1342.53Chaperone protein dnaK OS=Shewanella baltica (stra... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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