FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_RALME (Chaperone protein dnaK OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dnaK PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ITRA+ E L  +L  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  K++NPDE           +LSG+
Sbjct:  301 ITRAKLEALVEELITRTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVQEQVREFF-GKEARKDVNPDEAVAVGAAIQGSVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PSEFS (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain SBW25) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            I+RA+ E L  DL ++ +EP    L+DA +D  +++DV+LVGG TR+P VQQ + +FF GKE  K++NPDE           +L+G+
Sbjct:  300 ISRAKLEALVEDLVQRTIEPCRIALKDAGIDVGSINDVILVGGQTRMPLVQQKVTEFF-GKEARKDVNPDEAVAMGAAIQGAVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PECCP (Chaperone protein dnaK OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  +L  + +EP++  L+DA +  S + DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +LSG+
Sbjct:  300 VTRAKLESLVEELVNRSLEPLKVALQDAGLSVSEIQDVILVGGQTRMPLVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_METNO (Chaperone protein dnaK OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ++RA+FE L  DL ++ +EP  K L+DA +  + + +VVLVGG TR+PK+Q +++ FF GKE  K +NPDE           +L G+
Sbjct:  295 LSRAKFESLVDDLIQRTIEPCRKALKDAGVSANEIDEVVLVGGMTRMPKIQDVVKTFF-GKEPHKGVNPDEVVAIGAAVQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_LARHH (Chaperone protein dnaK OS=Laribacter hongkongensis (strain HLHK9) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ITRA+FE L  +L  + +EP    ++DA +  S + DV+LVGG +R+PKVQ+ ++ FF GKE  +++NPDE           +LSGE
Sbjct:  301 ITRAKFESLVDELIERSIEPCRVAIKDAGLKVSDIDDVILVGGQSRMPKVQEAVKTFF-GKEPRRDVNPDEAVAVGAAIQGSVLSGE 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_HAES2 (Chaperone protein dnaK OS=Haemophilus somnus (strain 2336) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + MEPV+  L DA +  S ++DV+LVGG TR+P VQQ + +FF GKE  +++NPDE           +L+G+
Sbjct:  300 LTRAKLEALVEDLVARSMEPVKVALSDAGLSVSEINDVILVGGQTRMPLVQQKVAEFF-GKEPRRDVNPDEAVAIGAAVQGGVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_HAES1 (Chaperone protein dnaK OS=Haemophilus somnus (strain 129Pt) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + MEPV+  L DA +  S ++DV+LVGG TR+P VQQ + +FF GKE  +++NPDE           +L+G+
Sbjct:  300 LTRAKLEALVEDLVARSMEPVKVALSDAGLSVSEINDVILVGGQTRMPLVQQKVAEFF-GKEPRRDVNPDEAVAIGAAVQGGVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_FRAAA (Chaperone protein dnaK OS=Frankia alni (strain ACN14a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ++TRA F+ +  DL  +C  P ++ ++DA +  S +  VVLVGGSTR+P V  L++D   GKE  K +NPDE           +L GE
Sbjct:  271 SLTRAEFQRMTSDLIDRCKHPFQQAVKDAGIKVSDIDHVVLVGGSTRMPAVVDLVRDLTGGKEPNKGVNPDEVVAVGASLQAGVLKGE 358          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_ERWCT (Chaperone protein dnaK OS=Erwinia carotovora subsp. atroseptica GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  +L  + +EP++  L+DA +  S + DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +LSG+
Sbjct:  300 VTRAKLESLVEELVNRSLEPLKVALQDAGLSVSEIQDVILVGGQTRMPLVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLSGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_ENT38 (Chaperone protein dnaK OS=Enterobacter sp. (strain 638) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP++  L+DA +  S + DV+LVGG TR+P VQ+ + +FF GKE  K++NPDE           +L+GE
Sbjct:  300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIQDVILVGGQTRMPMVQKKVAEFF-GKEPRKDVNPDEAVAIGAAVQGGVLTGE 385          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RALME8.117e-1342.53Chaperone protein dnaK OS=Ralstonia metallidurans ... [more]
DNAK_PSEFS8.117e-1342.53Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_PECCP8.117e-1342.53Chaperone protein dnaK OS=Pectobacterium carotovor... [more]
DNAK_METNO8.117e-1341.38Chaperone protein dnaK OS=Methylobacterium nodulan... [more]
DNAK_LARHH8.117e-1342.53Chaperone protein dnaK OS=Laribacter hongkongensis... [more]
DNAK_HAES28.117e-1343.68Chaperone protein dnaK OS=Haemophilus somnus (stra... [more]
DNAK_HAES18.117e-1343.68Chaperone protein dnaK OS=Haemophilus somnus (stra... [more]
DNAK_FRAAA8.117e-1339.77Chaperone protein dnaK OS=Frankia alni (strain ACN... [more]
DNAK_ERWCT8.117e-1342.53Chaperone protein dnaK OS=Erwinia carotovora subsp... [more]
DNAK_ENT388.117e-1342.53Chaperone protein dnaK OS=Enterobacter sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
back to top