FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_EDWI9 (Chaperone protein dnaK OS=Edwardsiella ictaluri (strain 93-146) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  +L  + MEP++  L+DA +  S + DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +L+G+
Sbjct:  300 VTRAKLESLVEELVARSMEPLKVALKDAGLSVSDIDDVILVGGQTRMPMVQKQVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLAGD 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BLOPB (Chaperone protein dnaK OS=Blochmannia pennsylvanicus (strain BPEN) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + MEP++  L+DA +  S ++DV+LVGG TR+P VQ+ + +FF  KE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLESLVEDLVNRTMEPLKVALKDANLSVSNINDVILVGGQTRMPLVQKKVSEFFR-KEPRRDVNPDEAVAIGAAVQGGVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP13_MOUSE (Heat shock 70 kDa protein 13 OS=Mus musculus GN=Hspa13 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 31/70 (44.29%), Postives = 55/70 (78.57%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPD 218
            ++R  F+ LN DLF+K + P+++ L++  +DK+ + +VVLVGGSTRIP+++Q++Q+FF GK+   +++PD
Sbjct:  365 VSRKLFDALNEDLFQKILVPIQQVLKEGLLDKTEIDEVVLVGGSTRIPRIRQVIQEFF-GKDPNTSVDPD 433          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: GRP75_CHICK (Stress-70 protein, mitochondrial OS=Gallus gallus GN=HSPA9 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 34/87 (39.08%), Postives = 57/87 (65.52%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ++R++FE +  DL ++ + P +K ++DA++ KS + +V+LVGG TR+PKVQQ +QD F G+   K +NPDE           +L+G+
Sbjct:  348 LSRSQFEGIVADLIKRTVAPCQKAMQDAEVSKSDIGEVILVGGMTRMPKVQQTVQDLF-GRAPSKAVNPDEAVAIGAAIQGGVLAGD 433          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_XANP2 (Chaperone protein dnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL ++ +EP    L+DA +    + +VVLVGG TR+PKVQ++++ FF GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFEALVDDLIQRTVEPCRLALKDAGLTAGQIDEVVLVGGMTRMPKVQEVVKQFF-GKEPHKGVNPDEVVAIGAAVQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_RHILO (Chaperone protein dnaK OS=Rhizobium loti GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL ++ ++P +  L+DA +    + +VVLVGG TR+PK+Q++++ FF GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFESLVEDLVQRTIDPCKAALKDAGLKAGEIDEVVLVGGMTRMPKIQEIVKQFF-GKEPHKGVNPDEVVALGAAIQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_PROM5 (Chaperone protein dnaK OS=Prochlorococcus marinus (strain MIT 9515) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA FEEL   L  +C  PVE+ L+DAK+    + ++V+VGGSTR+P VQ+L++    GK+  + +NPDE           +L+GE
Sbjct:  294 LTRANFEELASKLIDRCRVPVEQALKDAKLSTGEIDEIVMVGGSTRMPAVQELVKR-VTGKDPNQTVNPDEVVAVGAAIQGGVLAGE 379          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_METRJ (Chaperone protein dnaK OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ++RA+FE L  DL ++ +EP  K L+DA +  S + +VVLVGG  R+PK+Q++++ FF GKE  K +NPDE           +L G+
Sbjct:  295 LSRAKFESLVDDLVQRTIEPCRKALKDAGVSASEIDEVVLVGGMIRMPKIQEVVKSFF-GKEPHKGVNPDEVVAIGAAVQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_MESSB (Chaperone protein dnaK OS=Mesorhizobium sp. (strain BNC1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+FE L  DL  + +EP    L+DA +    + +VVLVGG TR+PKVQ+ +++FF GKE  K +NPDE           +L G+
Sbjct:  295 LTRAKFESLVEDLVTRTIEPCRAALKDAGLSAGEIDEVVLVGGMTRMPKVQETVKNFF-GKEPHKGVNPDEVVAMGAAIQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_MANSM (Chaperone protein dnaK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dnaK PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSG 266
            +TRA+ E L  DL  + MEPV+  L DA +  S + DV+LVGG TR+P VQQ + +FF GKE  K++NPDE           +L+G
Sbjct:  300 LTRAKLEALVEDLVARSMEPVKVALSDAGLSVSQIDDVILVGGQTRMPLVQQKVAEFF-GKEPRKDVNPDEAVAVGAAVQGGVLAG 384          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_EDWI98.117e-1342.53Chaperone protein dnaK OS=Edwardsiella ictaluri (s... [more]
DNAK_BLOPB8.117e-1341.38Chaperone protein dnaK OS=Blochmannia pennsylvanic... [more]
HSP13_MOUSE1.060e-1244.29Heat shock 70 kDa protein 13 OS=Mus musculus GN=Hs... [more]
GRP75_CHICK1.060e-1239.08Stress-70 protein, mitochondrial OS=Gallus gallus ... [more]
DNAK_XANP21.060e-1242.53Chaperone protein dnaK OS=Xanthobacter autotrophic... [more]
DNAK_RHILO1.060e-1240.23Chaperone protein dnaK OS=Rhizobium loti GN=dnaK P... [more]
DNAK_PROM51.060e-1241.38Chaperone protein dnaK OS=Prochlorococcus marinus ... [more]
DNAK_METRJ1.060e-1241.38Chaperone protein dnaK OS=Methylobacterium radioto... [more]
DNAK_MESSB1.060e-1242.53Chaperone protein dnaK OS=Mesorhizobium sp. (strai... [more]
DNAK_MANSM1.060e-1245.35Chaperone protein dnaK OS=Mannheimia succiniciprod... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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