FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_LAWIP (Chaperone protein dnaK OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E+L MDL  + +EP  K L DA +  S + +V+LVGG TR+P VQ+ + +FF GKE  +++NPDE           IL+G+
Sbjct:  294 LTRAKLEQLVMDLVGRTIEPCSKALEDAGLQTSNIDEVILVGGMTRMPLVQKKVAEFF-GKEPNRSVNPDEVVAMGAAIQGGILAGD 379          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_HAEDU (Chaperone protein dnaK OS=Haemophilus ducreyi GN=dnaK PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP++  L DA +  S ++DV+LVGG TR+P VQ+ + DFF GKE  K++NPDE           +L+G+
Sbjct:  299 VTRAKLEALVEDLVSRSLEPLKTALADAGLSVSEINDVILVGGQTRMPLVQKKVADFF-GKEPRKDVNPDEAVAIGAAVQGGVLAGD 384          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_GEOSW (Chaperone protein dnaK OS=Geobacillus sp. (strain WCH70) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKV 284
            +T+TRA+FEEL+  L  + M PV + L+DA +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++GE  + V
Sbjct:  267 TTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPSDIDKVILVGGSTRIPAVQEAIKREL-GKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVV 359          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_CAUSK (Chaperone protein dnaK OS=Caulobacter sp. (strain K31) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            ++R++ E L  DL  + + P E+ L+DA + KS + +V+LVGG +R+PKVQQ +QDFF G+E  K +NPDE           +L G+
Sbjct:  295 LSRSKLEALVEDLITRTIGPCEQALKDAGLKKSDIDEVILVGGMSRMPKVQQAVQDFF-GREPHKGVNPDEVVALGAAVQAGVLQGD 380          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_CARRP (Chaperone protein dnaK OS=Carsonella ruddii (strain PV) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSG 266
            ITR++ E L  DL  K ++P E  L DAK+ K+ + +++LVGG TR+P VQ+++ DFF  K + K+INPDE           +LSG
Sbjct:  300 ITRSKLESLVEDLILKSLKPCEIALNDAKISKNKIDEIILVGGQTRMPLVQKMVSDFFE-KVVKKDINPDEAVAIGASVQAGVLSG 384          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BURPS (Chaperone protein dnaK OS=Burkholderia pseudomallei GN=dnaK PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDDVILVGGQTRMPKVQEKVKEFF-GKEPRRDVNPDEAVAVGAAIQGQVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BURP6 (Chaperone protein dnaK OS=Burkholderia pseudomallei (strain 668) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDDVILVGGQTRMPKVQEKVKEFF-GKEPRRDVNPDEAVAVGAAIQGQVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BURP1 (Chaperone protein dnaK OS=Burkholderia pseudomallei (strain 1710b) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDDVILVGGQTRMPKVQEKVKEFF-GKEPRRDVNPDEAVAVGAAIQGQVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BURP0 (Chaperone protein dnaK OS=Burkholderia pseudomallei (strain 1106a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDDVILVGGQTRMPKVQEKVKEFF-GKEPRRDVNPDEAVAVGAAIQGQVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BURMS (Chaperone protein dnaK OS=Burkholderia mallei (strain SAVP1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDDVILVGGQTRMPKVQEKVKEFF-GKEPRRDVNPDEAVAVGAAIQGQVLSGD 386          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_LAWIP1.060e-1242.53Chaperone protein dnaK OS=Lawsonia intracellularis... [more]
DNAK_HAEDU1.060e-1242.53Chaperone protein dnaK OS=Haemophilus ducreyi GN=d... [more]
DNAK_GEOSW1.060e-1241.49Chaperone protein dnaK OS=Geobacillus sp. (strain ... [more]
DNAK_CAUSK1.060e-1241.38Chaperone protein dnaK OS=Caulobacter sp. (strain ... [more]
DNAK_CARRP1.060e-1243.02Chaperone protein dnaK OS=Carsonella ruddii (strai... [more]
DNAK_BURPS1.060e-1241.38Chaperone protein dnaK OS=Burkholderia pseudomalle... [more]
DNAK_BURP61.060e-1241.38Chaperone protein dnaK OS=Burkholderia pseudomalle... [more]
DNAK_BURP11.060e-1241.38Chaperone protein dnaK OS=Burkholderia pseudomalle... [more]
DNAK_BURP01.060e-1241.38Chaperone protein dnaK OS=Burkholderia pseudomalle... [more]
DNAK_BURMS1.060e-1241.38Chaperone protein dnaK OS=Burkholderia mallei (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
back to top