FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig451 contig Ccv1_Contig451:201..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BURMA (Chaperone protein dnaK OS=Burkholderia mallei GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDDVILVGGQTRMPKVQEKVKEFF-GKEPRRDVNPDEAVAVGAAIQGQVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BURM9 (Chaperone protein dnaK OS=Burkholderia mallei (strain NCTC 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDDVILVGGQTRMPKVQEKVKEFF-GKEPRRDVNPDEAVAVGAAIQGQVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BURM7 (Chaperone protein dnaK OS=Burkholderia mallei (strain NCTC 10247) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 36/87 (41.38%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TRA+ E L  DL  + +EP    ++DA +  S + DV+LVGG TR+PKVQ+ +++FF GKE  +++NPDE           +LSG+
Sbjct:  301 VTRAKLEALVEDLVERTIEPCRTAIKDAGVKVSDIDDVILVGGQTRMPKVQEKVKEFF-GKEPRRDVNPDEAVAVGAAIQGQVLSGD 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BUCBP (Chaperone protein dnaK OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/87 (42.53%), Postives = 55/87 (63.22%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            +TR++ E L  DL  + +EP++  L+DAK+  S + DV+LVGG TR+P VQ+ + +FF  KE  K++NPDE           +LSGE
Sbjct:  300 VTRSKLESLVEDLITRSIEPLKIALKDAKLSISDIDDVILVGGQTRMPMVQKKVAEFFK-KEPRKDVNPDEAVAVGAAVQGGVLSGE 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BREBN (Chaperone protein dnaK OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKV 284
            +TRA+FEEL+ +L  + M P  + L+DA +  S +  V+LVGGSTRIP VQ+ ++  F GKE  K +NPDE           +L+G+  + V
Sbjct:  270 LTRAKFEELSAELVERTMGPTRQALKDAGLTPSELDRVILVGGSTRIPAVQEAIKK-FTGKEPHKGVNPDEVVALGAAVQAGVLTGDVKDVV 360          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BACSU (Chaperone protein dnaK OS=Bacillus subtilis GN=dnaK PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKV 284
            T+TRA+FEEL+  L  + M PV + L+DA +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+  + V
Sbjct:  269 TLTRAKFEELSSHLVERTMGPVRQALQDAGLSASEIDKVILVGGSTRIPAVQEAIKK-ETGKEAHKGVNPDEVVALGAAIQGGVITGDVKDVV 360          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BACLD (Chaperone protein dnaK OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKV 284
            T+TRA+FEEL+  L  + M PV + L+DA +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +++G+  + V
Sbjct:  269 TLTRAKFEELSSHLVERTMGPVRQALQDAGLSASEIDKVILVGGSTRIPAVQEAIKK-ETGKEAHKGVNPDEVVALGAAIQGGVITGDVKDVV 360          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BACCQ (Chaperone protein dnaK OS=Bacillus cereus (strain Q1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEEL+ +L  + +EP  + L+DA +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +L+G+
Sbjct:  269 TLTRAKFEELSANLVERTLEPTRRALKDAGLSASELDRVILVGGSTRIPAVQEAIKR-ETGKEPYKGVNPDEVVALGAAVQGGVLTGD 355          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BACC7 (Chaperone protein dnaK OS=Bacillus cereus (strain AH187) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEEL+ +L  + +EP  + L+DA +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +L+G+
Sbjct:  269 TLTRAKFEELSANLVERTLEPTRRALKDAGLSASELDRVILVGGSTRIPAVQEAIKR-ETGKEPYKGVNPDEVVALGAAVQGGVLTGD 355          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: DNAK_BACC1 (Chaperone protein dnaK OS=Bacillus cereus (strain ATCC 10987) GN=dnaK PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGE 269
            T+TRA+FEEL+ +L  + +EP  + L+DA +  S +  V+LVGGSTRIP VQ+ ++    GKE  K +NPDE           +L+G+
Sbjct:  269 TLTRAKFEELSANLVERTLEPTRRALKDAGLSASELDRVILVGGSTRIPAVQEAIKR-ETGKEPYKGVNPDEVVALGAAVQGGVLTGD 355          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BURMA1.060e-1241.38Chaperone protein dnaK OS=Burkholderia mallei GN=d... [more]
DNAK_BURM91.060e-1241.38Chaperone protein dnaK OS=Burkholderia mallei (str... [more]
DNAK_BURM71.060e-1241.38Chaperone protein dnaK OS=Burkholderia mallei (str... [more]
DNAK_BUCBP1.060e-1242.53Chaperone protein dnaK OS=Buchnera aphidicola subs... [more]
DNAK_BREBN1.060e-1241.30Chaperone protein dnaK OS=Brevibacillus brevis (st... [more]
DNAK_BACSU1.060e-1240.86Chaperone protein dnaK OS=Bacillus subtilis GN=dna... [more]
DNAK_BACLD1.060e-1240.86Chaperone protein dnaK OS=Bacillus licheniformis (... [more]
DNAK_BACCQ1.060e-1242.05Chaperone protein dnaK OS=Bacillus cereus (strain ... [more]
DNAK_BACC71.060e-1242.05Chaperone protein dnaK OS=Bacillus cereus (strain ... [more]
DNAK_BACC11.060e-1242.05Chaperone protein dnaK OS=Bacillus cereus (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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