FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig451 contig Ccv1_Contig451:201..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.627e-29
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK LRDAK+DK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L K+INPDE           IL G+ +E VQDL
Sbjct:  295 TSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.627e-29
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK LRDAK+DK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L K+INPDE           IL G+ +E VQDL
Sbjct:  295 TSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.627e-29
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK LRDAK+DK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L K+INPDE           IL G+ +E VQDL
Sbjct:  295 TSITRARFEELCSDLFRSTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.186e-29
Identity = 63/97 (64.95%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  +EPVEK LRDAK+DK+ +HD+VLVGGSTRIPKVQ+LLQDFFNG++L K+INPDE           IL G+ +E VQDL
Sbjct:  295 TSITRARFEELCSDLFRGTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.186e-29
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKV 284
            ++ITRA+FEEL MDLFR   EPVEK LRD+K+ KS +HDVVLVGGSTRIPKVQQLL D+FNGKELCKNINPDE           IL+G+ +EK+
Sbjct:  302 ASITRAKFEELCMDLFRGTSEPVEKVLRDSKISKSEIHDVVLVGGSTRIPKVQQLLIDYFNGKELCKNINPDEAVAYGAAVQAAILAGDTSEKM 395          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.080e-29
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEELN DLFR  ++PVEK LRDAKMDK+ VHD+VLVGGSTRIPK+++LLQDFFNGKEL K+INPDE              G+ +E VQDL
Sbjct:  295 TSITRARFEELNADLFRGTLDPVEKALRDAKMDKAQVHDIVLVGGSTRIPKMEKLLQDFFNGKELNKSINPDEAVAYGAAVQAESSLGDKSENVQDL 391          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP72_SCHPO (Probable heat shock protein ssa2 OS=Schizosaccharomyces pombe GN=ssa2 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 1.055e-28
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFRK MEPVE+ LRD+K+DK++V+++VLVGGSTRIP+VQ+L+ DFFNGKE CK+INPDE           +L+G+ +EK QDL
Sbjct:  293 TSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDL 389          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_ONCVO (Heat shock 70 kDa protein (Fragment) OS=Onchocerca volvulus PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.055e-28
Identity = 65/97 (67.01%), Postives = 74/97 (76.29%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            + ITRARFEEL  DLFR  M+PVEK LR AKMDK+ VHD+VLVGGSTRIPKVQ+LL DFF+GKEL K+INPDE           ILSG+ +E VQDL
Sbjct:   52 TNITRARFEELCADLFRSTMDPVEKALRVAKMDKAQVHDIVLVGGSTRIPKVQKLLSDFFSGKELNKSINPDEAVAYGAAVQAAILSGDKSEAVQDL 148          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP71_SCHPO (Probable heat shock protein ssa1 OS=Schizosaccharomyces pombe GN=ssa1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 1.800e-28
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLFR  MEPVEK LRD+K+DKS+V+++VLVGGSTRIP++Q+L+ DFFNGKE CK+INPDE           IL G+ +EK QDL
Sbjct:  293 TSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDL 389          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.351e-28
Identity = 61/97 (62.89%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            S I+RARFEELNMDLFR  M+PVE+ L DAKMDK  +HDVVLVGGSTRIPK+Q+LLQD F GK+L  +INPDE           IL+G G+ ++QDL
Sbjct:  296 SKISRARFEELNMDLFRSTMQPVERALSDAKMDKKAIHDVVLVGGSTRIPKIQKLLQDLFGGKQLNLSINPDEAVAYGAAVQAAILTGVGSSQIQDL 392          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71B_BOSMU3.627e-2964.95Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HS71A_PIG3.627e-2964.95Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HS71A_BOVIN3.627e-2964.95Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA... [more]
HSP71_RAT6.186e-2964.95Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_PYRSA6.186e-2967.02Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]
HSP7C_ICTPU8.080e-2964.95Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP72_SCHPO1.055e-2861.86Probable heat shock protein ssa2 OS=Schizosaccharo... [more]
HSP70_ONCVO1.055e-2867.01Heat shock 70 kDa protein (Fragment) OS=Onchocerca... [more]
HSP71_SCHPO1.800e-2862.89Probable heat shock protein ssa1 OS=Schizosaccharo... [more]
HSP7B_DROME2.351e-2862.89Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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