FC931643

Overview
NameFC931643
Unique NameFC931643
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length293
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig451 contig Ccv1_Contig451:201..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.685e-26
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEK 281
            ++ITRARFEEL  DLFR  MEPVE+ LRDAK+DKS+VH++VLVGGSTRIPK+Q+++ DFFNGKE  K+INPDE           ILSG+ + K
Sbjct:  293 TSITRARFEELCQDLFRSTMEPVERVLRDAKIDKSSVHEIVLVGGSTRIPKIQKMVSDFFNGKEPNKSINPDEGVAYGAAVQAAILSGDTSSK 385          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP71_DROME (Major heat shock 70 kDa protein Ab OS=Drosophila melanogaster GN=Hsp70Ab PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++RARFEEL  DLFR  ++PVEK L DAKMDK  +HD+VLVGGSTRIPKVQ LLQDFF+GK L  +INPDE           ILSG+ + K+QD+
Sbjct:  295 VSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQDFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDV 389          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_PLAFA (Heat shock 70 kDa protein OS=Plasmodium falciparum PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            T++RARFEEL +D FR  + PVEK L+DA MDK +VH+VVLVGGSTRIPK+Q L+++FFNGKE C++INPDE           ILSG+ +  VQDL
Sbjct:  309 TVSRARFEELCIDYFRDTLIPVEKVLKDAMMDKKSVHEVVLVGGSTRIPKIQTLIKEFFNGKEACRSINPDEAVAYGAAVQAAILSGDQSNAVQDL 404          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_PLACB (Heat shock 70 kDa protein OS=Plasmodium cynomolgi (strain Berok) PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 57/96 (59.38%), Postives = 72/96 (75.00%), Query Frame = 3
Query:    6 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            T++RARFEEL +D FR  + PVEK L+DA MDK +VH+VVLVGGSTRIPK+Q L+++FFNGKE C++INPDE           ILSG+ +  VQDL
Sbjct:  309 TVSRARFEELCIDYFRDTLIPVEKVLKDAMMDKKSVHEVVLVGGSTRIPKIQTLIKEFFNGKEACRSINPDEAVAYGAAVQAAILSGDQSNAVQDL 404          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_DROME (Major heat shock 70 kDa protein Aa OS=Drosophila melanogaster GN=Hsp70Aa PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++RARFEEL  DLFR  ++PVEK L DAKMDK  +HD+VLVGGSTRIPKVQ LLQDFF+GK L  +INPDE           ILSG+ + K+QD+
Sbjct:  295 VSRARFEELCADLFRNTLQPVEKALNDAKMDKGQIHDIVLVGGSTRIPKVQSLLQDFFHGKNLNLSINPDEAVAYGAAVQAAILSGDQSGKIQDV 389          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP70_AJECA (Heat shock 70 kDa protein OS=Ajellomyces capsulata GN=HSP70 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEK 281
            ++ITRARFEEL  DLFR  MEPVE+ LRDAK+DKS+VH++VLVGGSTRIP++Q+L+ DFFNGKE  K+INPDE           ILSG+ + K
Sbjct:  294 TSITRARFEELCQDLFRSTMEPVERVLRDAKIDKSSVHEIVLVGGSTRIPRIQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILSGDTSSK 386          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 2.200e-26
Identity = 56/95 (58.95%), Postives = 72/95 (75.79%), Query Frame = 3
Query:    9 ITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            +TRARFEELN DLFRK M PV+K + DA ++KS +H++VLVGGSTRIPKVQQLL+D+F+GKE  K +NPDE           ILSGEG ++ +D+
Sbjct:  326 LTRARFEELNNDLFRKTMGPVKKAMEDAGLEKSQIHEIVLVGGSTRIPKVQQLLRDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGEGGDETKDI 420          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.874e-26
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            ++ITRARFEEL  DLF  C+EPVEK L+D K+DK ++ ++VLVGGSTRIPKVQQL+Q+ FNGKEL K+INPDE           ILSG+ + ++ +L
Sbjct:  296 TSITRARFEELCSDLFNNCIEPVEKVLKDCKLDKKSIDEIVLVGGSTRIPKVQQLIQNLFNGKELNKSINPDEAVAYGAAVQAAILSGDKSSRISEL 392          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP71_PARBA (Heat shock 70 kDa protein 1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.753e-26
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEK 281
            ++ITRARFEEL  DLFR  M+PVE+ LRDAK+DKS+VH++VLVGGSTRIP++Q+L+ DFFNGKE  K+INPDE           ILSG+   K
Sbjct:  292 TSITRARFEELCQDLFRSTMDPVERVLRDAKIDKSSVHEIVLVGGSTRIPRIQKLVSDFFNGKEPNKSINPDEAVAYGAAVQAAILSGDSTSK 384          
BLAST of FC931643 vs. ExPASy Swiss-Prot
Match: HSP68_DROME (Heat shock protein 68 OS=Drosophila melanogaster GN=Hsp68 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.902e-26
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 3
Query:    3 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEXXXXXXXXXXXILSGEGNEKVQDL 293
            S ++RARFEEL  DLFR  +EPVEK L+DAKMDKS +HD+VLVGGSTRIPKVQ LLQ+FF GK L  +INPDE           ILSG+ + +++D+
Sbjct:  293 SKVSRARFEELCGDLFRNTLEPVEKALKDAKMDKSQIHDIVLVGGSTRIPKVQNLLQNFFGGKTLNLSINPDEAVAYGAAIQAAILSGDKSSEIKDV 389          
The following BLAST results are available for this feature:
BLAST of FC931643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_TRIRU1.685e-2662.37Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]
HSP71_DROME2.200e-2661.05Major heat shock 70 kDa protein Ab OS=Drosophila m... [more]
HSP70_PLAFA2.200e-2659.38Heat shock 70 kDa protein OS=Plasmodium falciparum... [more]
HSP70_PLACB2.200e-2659.38Heat shock 70 kDa protein OS=Plasmodium cynomolgi ... [more]
HSP70_DROME2.200e-2661.05Major heat shock 70 kDa protein Aa OS=Drosophila m... [more]
HSP70_AJECA2.200e-2662.37Heat shock 70 kDa protein OS=Ajellomyces capsulata... [more]
BIP2_MAIZE2.200e-2658.95Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HS7C3_DICDI2.874e-2657.73Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HSP71_PARBA3.753e-2661.29Heat shock 70 kDa protein 1 OS=Paracoccidioides br... [more]
HSP68_DROME4.902e-2659.79Heat shock protein 68 OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionC34107D10EF PostHarvP1 Citrus clementina cDNA clone C34107D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931643 ID=FC931643; Name=FC931643; organism=Citrus clementina; type=EST; length=293bp
ACTCAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATCTCTTC
AGGAAGTGTATGGAGCCTGTTGAGAAATGTTTGAGGGATGCTAAGATGGA
CAAGAGCACTGTCCACGATGTTGTGCTTGTGGGTGGTTCCACTAGGATTC
CCAAGGTGCAACAGCTTTTGCAAGACTTCTTCAATGGCAAGGAGCTCTGC
AAGAACATTAATCCAGATGAGGCTGTTGCTTATGGTGCTGCTGTTCAGGC
TGCCATCCTGAGCGGCGAGGGCAATGAGAAGGTTCAGGATCTG
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