FC931644

Overview
NameFC931644
Unique NameFC931644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK_LACRD (S-adenosylmethionine synthetase OS=Lactobacillus reuteri (strain DSM 20016) GN=metK PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 7.964e-67
Identity = 131/223 (58.74%), Postives = 165/223 (73.99%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET   T LV+VFGE++TKA VN ++IVRDT R IG+     G DADNC V+  I++QSPDIAQGV   L  R  E      IGAGDQG MFGYATDETPE+MPL+ VL+ +L  K+ ++RK+G   +LRPD K +VTVEY +EN    P+RV TV++STQHD  V+ D+I  D+KE VI+ VIP +YLD++T + +NP+GRFVIGGP GDAGLTGRKII+DTY
Sbjct:   44 ETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYTDGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGEADPLDKIGAGDQGLMFGYATDETPEYMPLTLVLSHKLMRKIAQLRKDGVISYLRPDAKAEVTVEY-DENDK--PLRVDTVVLSTQHDPEVSLDQIKKDIKEQVIEAVIPAEYLDDQTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTY 263          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK2_YEAST (S-adenosylmethionine synthetase 2 OS=Saccharomyces cerevisiae GN=SAM2 PE=1 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 1.358e-66
Identity = 122/217 (56.22%), Postives = 160/217 (73.73%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET  KT ++MVFGEITTKA ++Y++IVRDT + IG+     G D   C VLV IEQQSPDIAQG+H    K  E++GAGDQG MFGYATDETPE +PL+ +LA +L   + + R++G+ PWLRPD KTQVTVEY ++NG  VP R+ TV+IS QH + ++  ++   L++ +++ VIP+  LDE T + + PSGRFVIGGP GDAGLTGRKII+D Y
Sbjct:   46 ETAAKTGMIMVFGEITTKARLDYQQIVRDTIKKIGYDDSAKGFDYKTCNVLVAIEQQSPDIAQGLH--YEKSLEDLGAGDQGIMFGYATDETPEGLPLTILLAHKLNMAMADARRDGSLPWLRPDTKTQVTVEYEDDNGRWVPKRIDTVVISAQHADEISTADLRTQLQKDIVEKVIPKDMLDENTKYFIQPSGRFVIGGPQGDAGLTGRKIIVDAY 260          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK5_CAEEL (Probable S-adenosylmethionine synthetase 5 OS=Caenorhabditis elegans GN=sams-5 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.271e-64
Identity = 121/217 (55.76%), Postives = 159/217 (73.27%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET TKT ++M+ GEIT+KA V+Y+ +VR+  + IG+     G D   C VLV +EQQSP+IA GVH  + K   ++GAGDQG MFGYATDET E MPL+ +L+ +L  KL E+R++G   W+RPD KTQVT+EY +E GA VP+RVHTV+ISTQH   ++ +++  +L E VIK VIP   +D  T++HLNP G FV+GGP GDAGLTGRKII+DTY
Sbjct:   45 ETVTKTGMIMLCGEITSKAVVDYQVLVRNVIKKIGYDDSSKGFDYKTCNVLVALEQQSPEIAAGVH--VDKDIADVGAGDQGIMFGYATDETEEAMPLTLLLSHKLNYKLHELRRSGELEWVRPDSKTQVTIEYSSEGGACVPLRVHTVVISTQHSPDISLEDLRKELIEKVIKVVIPGNLIDNDTVYHLNPCGSFVVGGPMGDAGLTGRKIIVDTY 259          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK_CLOPS (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.661e-64
Identity = 127/223 (56.95%), Postives = 155/223 (69.51%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET   T LVMV GEITT   V+  KI R+T +NIG+     G D + C V+  I++QS DIA GV   L  R  E      +GAGDQG MFG+AT+ET EFMP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T +++NP+GRFVIGGP GDAGLTGRKII+DTY
Sbjct:   42 ETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGEKIDIDAVGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYYINPTGRFVIGGPQGDAGLTGRKIIVDTY 260          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK_CLOP1 (S-adenosylmethionine synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=metK PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.661e-64
Identity = 127/223 (56.95%), Postives = 155/223 (69.51%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEE------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET   T LVMV GEITT   V+  KI R+T +NIG+     G D + C V+  I++QS DIA GV   L  R  E      +GAGDQG MFG+AT+ET EFMP    +A +L  +LTEVRKNGT P+LRPDGKTQVTVEY N+     PVR+  ++ISTQH   V+ ++I ADL EHVIK VIP + LDE T +++NP+GRFVIGGP GDAGLTGRKII+DTY
Sbjct:   42 ETAVTTGLVMVMGEITTNCYVDIPKIARETIKNIGYDRAKYGFDCETCSVMTTIDEQSSDIAMGVDEALESRAGEKIDIDAVGAGDQGMMFGFATNETEEFMPAPIAMAHRLSRRLTEVRKNGTLPYLRPDGKTQVTVEYENDK----PVRIDAIVISTQHGPEVSQEQIQADLMEHVIKAVIPAELLDENTKYYINPTGRFVIGGPQGDAGLTGRKIIVDTY 260          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK_GEOTN (S-adenosylmethionine synthetase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=metK PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.242e-64
Identity = 129/225 (57.33%), Postives = 155/225 (68.89%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET   T LV+V GEITT   V+  +IVRDT R IG+     G DAD C VL  I++QSPDIA GV   L  R         E IGAGDQG MFG+A +ET E MPL   LA +L  +L EVRK    P+LRPDGKTQVT+EY +ENG   PVRV T++ISTQH   + +D+I  D+KEHVIKP++P + LDE T + +NP+GRFVIGGP GDAGLTGRKII+DTY
Sbjct:   45 ETSVTTGLVLVSGEITTSTYVDIPRIVRDTVREIGYTRAKFGFDADTCAVLTAIDEQSPDIAMGVDQALEAREGQMTDEEIEAIGAGDQGLMFGFACNETEELMPLPISLAHRLSRRLAEVRKTDVLPYLRPDGKTQVTIEY-DENGK--PVRVDTIVISTQHHPEIEHDQIERDMKEHVIKPIVPAELLDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTY 266          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK_DROME (S-adenosylmethionine synthetase OS=Drosophila melanogaster GN=M(2)21AB PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.076e-63
Identity = 118/217 (54.38%), Postives = 158/217 (72.81%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET  KT ++++ GEIT+KA V+Y+K+VR+T ++IG+     G D   C VL+ ++QQSP+IA GVH  +++  EEIGAGDQG MFGYATDET E MPL+ VLA +L  K+ E+R++    W RPD KTQVT EY    G+ VP RVHT+++S QH E ++ + + +++ E V+K VIP KY+D  TI H+NP G FVIGGP GDAGLTGRKII+DTY
Sbjct:   68 ETVAKTGMILLCGEITSKAVVDYQKVVRETVQHIGYDDSSKGFDFKTCNVLLALDQQSPEIAAGVH--VNRAEEEIGAGDQGIMFGYATDETEECMPLTVVLAHKLNEKIAELRRSDVFWWARPDSKTQVTCEYLFNQGSAVPKRVHTIVVSMQHSEKISLETLRSEVMEKVVKVVIPAKYIDANTIVHINPCGLFVIGGPMGDAGLTGRKIIVDTY 282          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK_GEOSW (S-adenosylmethionine synthetase OS=Geobacillus sp. (strain WCH70) GN=metK PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.836e-63
Identity = 127/225 (56.44%), Postives = 155/225 (68.89%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET   T LV+V GEITT   V+  KIVRDT R IG+     G DAD C VL  I++QSPDIA GV   L  R         E IGAGDQG MFG+A +ET E MPL   LA +L  +L+EVRK    P+LRPDGKTQVTVEY +ENG   PVR+ T+++S QH   +T ++I  D+KEHVIKP++P + +DE T + +NP+GRFVIGGP GDAGLTGRKII+DTY
Sbjct:   45 ETSVTTGLVLVSGEITTSTYVDIPKIVRDTVREIGYTRAKYGFDADTCAVLTSIDEQSPDIAMGVDKALEAREGQMTDEEIEAIGAGDQGLMFGFACNETKELMPLPISLAHRLARRLSEVRKEAILPYLRPDGKTQVTVEY-DENGK--PVRIDTIVVSAQHHPEITQEQIERDIKEHVIKPIVPAELIDENTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTY 266          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK_CARHZ (S-adenosylmethionine synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=metK PE=3 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.836e-63
Identity = 126/225 (56.00%), Postives = 154/225 (68.44%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET   T LV+V GEITT   V+  K+VR+T R IG+     G D D C V+  I++QSPDIA GV+  L  +         E IGAGDQG MFGYAT+ETPE MP+   LA +L  +L EVRK+   P+LRPDGKTQVTVEY  +     PVRV T+++STQH   V+ +EI  D+ EHV+KPVIPE  LDE T + +NP+GRFVIGGP GDAGLTGRKII+DTY
Sbjct:   43 ETAVTTGLVLVIGEITTSCYVDIPKVVRETIREIGYTRAKYGFDGDTCAVITSIDEQSPDIALGVNRALEAKTGEMTDDEIEAIGAGDQGMMFGYATNETPELMPMPISLAHRLARRLAEVRKSRLLPYLRPDGKTQVTVEYDGDK----PVRVDTIVVSTQHHPDVSQEEIRKDIIEHVVKPVIPEHLLDENTRYFVNPTGRFVIGGPQGDAGLTGRKIIVDTY 263          
BLAST of FC931644 vs. ExPASy Swiss-Prot
Match: METK_BACHD (S-adenosylmethionine synthetase OS=Bacillus halodurans GN=metK PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.342e-63
Identity = 127/225 (56.44%), Postives = 159/225 (70.67%), Query Frame = 3
Query:    3 ETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRP--------EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTY 653
            ET   T LV+V GEITT   V+  K+VRDT RNIG+     G D++ C VL  I++QSPDIAQGV+  L  R         E IGAGDQG MFGYA +ETPE MPL   L+ +L  +L+E RK    P+LRPDGKTQVTVEY +EN   V  R+ T++ISTQH   VT ++I +DLK+HVI+ V+PE+ +DE+T + +NP+GRFVIGGP GDAGLTGRKII+DTY
Sbjct:   47 ETSVTTGLVLVAGEITTSTYVDIPKVVRDTIRNIGYTRAKYGFDSETCAVLTSIDEQSPDIAQGVNQALEAREGQMTDAEIEAIGAGDQGLMFGYANNETPELMPLPISLSHKLARRLSEARKGEILPYLRPDGKTQVTVEY-DENDQSV--RIDTIVISTQHHPEVTLEQIESDLKQHVIRSVVPEELIDEETKYFINPTGRFVIGGPQGDAGLTGRKIIVDTY 268          
The following BLAST results are available for this feature:
BLAST of FC931644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LACRD7.964e-6758.74S-adenosylmethionine synthetase OS=Lactobacillus r... [more]
METK2_YEAST1.358e-6656.22S-adenosylmethionine synthetase 2 OS=Saccharomyces... [more]
METK5_CAEEL1.271e-6455.76Probable S-adenosylmethionine synthetase 5 OS=Caen... [more]
METK_CLOPS1.661e-6456.95S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_CLOP11.661e-6456.95S-adenosylmethionine synthetase OS=Clostridium per... [more]
METK_GEOTN8.242e-6457.33S-adenosylmethionine synthetase OS=Geobacillus the... [more]
METK_DROME1.076e-6354.38S-adenosylmethionine synthetase OS=Drosophila mela... [more]
METK_GEOSW1.836e-6356.44S-adenosylmethionine synthetase OS=Geobacillus sp.... [more]
METK_CARHZ1.836e-6356.00S-adenosylmethionine synthetase OS=Carboxydothermu... [more]
METK_BACHD5.342e-6356.44S-adenosylmethionine synthetase OS=Bacillus halodu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107D11EF PostHarvP1 Citrus clementina cDNA clone C34107D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931644 ID=FC931644; Name=FC931644; organism=Citrus clementina; type=EST; length=688bp
GTGAAACCTGTACCAAGACTAACTTGGTTATGGTTTTTGGAGAGATCACA
ACCAAAGCTAATGTTAATTACGAGAAAATTGTTCGTGACACTTGCCGCAA
CATTGGATTTGTCTCTGATGATGTGGGTTTGGATGCTGATAACTGTAAGG
TTTTGGTTTACATTGAGCAACAAAGCCCTGATATCGCCCAGGGCGTTCAT
GGTCATTTGTCTAAACGCCCCGAGGAAATCGGTGCTGGTGATCAGGGGCA
TATGTTTGGTTATGCTACCGATGAGACTCCTGAATTTATGCCTCTGAGTC
ATGTTCTTGCCACCCAGCTTGGTGCTAAACTTACCGAGGTTCGAAAGAAT
GGCACTTGCCCTTGGTTGAGGCCTGATGGCAAGACACAAGTTACTGTTGA
GTATTACAATGAGAATGGTGCTATGGTTCCTGTGAGAGTTCACACAGTTT
TGATCTCTACTCAGCATGACGAAACTGTGACTAATGATGAGATCGCTGCT
GATTTGAAAGAGCATGTGATCAAGCCTGTTATTCCTGAGAAGTACCTTGA
TGAGAAGACTATCTTCCATCTTAACCCATCCGGTCGTTTTGTGATTGGTG
GGCCTCATGGTGACGCTGGTTTGACCGGCCGCAAGATCATTATCGATACT
TATGGTGGTTGGGGAGCTCACGGTGGTGGTGCATTCTC
back to top