FC931653

Overview
NameFC931653
Unique NameFC931653
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9408 contig Ccv1_Contig9408:5..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931653 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.472e-44
Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = 2
Query:  302 LKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNR 619
            LK NPNMC +   SLDAR+D+ + EVP++GKEAATKAIKEWGQP S ITHLIFCT++GV +PG DY+L  L+GL+P VKR M+Y QGC+AG T+LRLAKDLAENN+
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNK 106          

HSP 2 Score: 38.891 bits (89), Expect = 5.472e-44
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 1
Query:  622 SRVLVVCSENTIPTFRGPSYTHID 693
            +RVL+VCSENT  TFRGPS T +D
Sbjct:  108 ARVLIVCSENTAVTFRGPSETDMD 131          
BLAST of FC931653 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.062e-38
Identity = 64/78 (82.05%), Postives = 72/78 (92.31%), Query Frame = 2
Query:  386 LGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNR 619
            LGKEAA KAIKEWGQPKS ITHLIFCT++GVDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENN+
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 78          

HSP 2 Score: 41.9726 bits (97), Expect = 1.062e-38
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query:  616 QGSRVLVVCSENTIPTFRGPSYTHID 693
            +G+RVLVVCSE T  TFRGPS TH+D
Sbjct:   78 KGARVLVVCSEVTAVTFRGPSDTHLD 103          
BLAST of FC931653 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.267e-25
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = 2
Query:  443 ITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAENNR 619
            ITHLI CT++ VDMPGADYQLT+L+GL P VKR M+YQQGC+AG T+LRLAKDLAENN+
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNK 58          

HSP 2 Score: 41.9726 bits (97), Expect = 1.267e-25
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query:  616 QGSRVLVVCSENTIPTFRGPSYTHID 693
            +G+RVLVVCSE T  TFRGPS TH+D
Sbjct:   58 KGARVLVVCSEVTAVTFRGPSDTHLD 83          
BLAST of FC931653 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 2
Query:  260 SMIRKRHMCLTEEILKANPNMCLHMGTSLDARQDISLVEVPKLGKEAATKAIKEWGQPKSNITHLIFCTSAGVDMPGADYQLTRLIGLNPDVKRMMIYQQGCYAGATILRLAKDLAE---NNRALV 628
            S I+ RH+ + +     N     H+ T  D       V VP L ++A  +A+K+WG  K +ITH++  TS G+ +P  +++L  L+GLN DV+R+ +   GC AG + LR A  LA+    NR LV
Sbjct: 2831 SQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILV 2954          
BLAST of FC931653 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 1.041e-11
Identity = 20/25 (80.00%), Postives = 24/25 (96.00%), Query Frame = 2
Query:  545 MIYQQGCYAGATILRLAKDLAENNR 619
            M+YQQGC+AG T+LRLAKDLAENN+
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAENNK 25          

HSP 2 Score: 41.9726 bits (97), Expect = 1.041e-11
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1
Query:  616 QGSRVLVVCSENTIPTFRGPSYTHID 693
            +G+RVLVVCSE T  TFRGPS TH+D
Sbjct:   25 KGARVLVVCSEITAVTFRGPSDTHLD 50          
The following BLAST results are available for this feature:
BLAST of FC931653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY5.472e-4468.87Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA1.062e-3882.05Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA1.267e-2576.27Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
PKS1_DICDI2.758e-1436.51Probable polyketide synthase 1 OS=Dictyostelium di... [more]
CHSY_MALDO1.041e-1180.00Chalcone synthase (Fragment) OS=Malus domestica GN... [more]

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Properties
Property NameValue
Genbank descriptionC34107E08EF PostHarvP1 Citrus clementina cDNA clone C34107E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931653 ID=FC931653; Name=FC931653; organism=Citrus clementina; type=EST; length=695bp
ACAATCGCGAAAGCGCAAACTTATTAATTAACTAAGTTTAAGTACTGTTT
TGGAAGCAATCTGACGATCAGAGATGGTAACAATGGAGGAGATTAGAAAG
GCTCAGCGAGCCGAGGGCCTGGCGACCATCCTCGCCATCAGCACGGCAAC
GCCGCCCAATTGTGTCATCCAAGCTGATTATCCTGACTATTACTTCGGGA
TCACCAACAGCGAGCACATGACTGAGCTCAAAGAGAAGTTCAAGCTCTTG
TGTGAGAAGTCGATGATAAGAAAGCGTCACATGTGCTTAACAGAAGAGAT
TTTAAAAGCAAACCCTAATATGTGCTTACACATGGGGACATCACTCGATG
CGCGCCAGGACATTTCTCTTGTTGAAGTACCAAAGCTTGGCAAAGAGGCG
GCAACCAAAGCTATCAAAGAATGGGGACAGCCCAAATCCAATATCACCCA
TCTCATTTTCTGCACATCTGCAGGCGTCGACATGCCTGGCGCTGACTATC
AGCTCACAAGACTCATCGGCCTCAACCCGGATGTTAAGCGTATGATGATA
TATCAACAAGGGTGTTATGCTGGCGCCACCATCCTTCGTCTTGCTAAAGA
TTTGGCTGAAAACAACAGGGCTCTCGTGTTCTTGTTGTTTGTTCTGAGAA
CACAATCCCCACTTTCCGTGGGCCGTCTTATACCCATATTGATTC
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