FC931655 | Citrus Genome Database

Overview


Name	FC931655
Unique Name	FC931655
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	688

Libraries


Library Name	Type
PostHarvP1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig9339	contig	Ccv1_Contig9339:1..689.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A2_DROME (Elongation factor 1-alpha 2 OS=Drosophila melanogaster GN=Ef1alpha100E PE=1 SV=2)

HSP 1 Score: 318.546 bits (815), Expect = 8.382e-89
Identity = 156/185 (84.32%), Postives = 168/185 (90.81%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVLDKLKAERERGITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLAFTLGVKQ+I   NKMD+T P YS+ARY+EI KEVSSY+KK+GY P
Sbjct:    1 MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNP 185

HSP 2 Score: 30.4166 bits (67), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P  V FVPISG+ GDNM+
Sbjct:  184 NPASVAFVPISGWHGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A1_RAT (Elongation factor 1-alpha 1 OS=Rattus norvegicus GN=Eef1a1 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A1_RABIT (Elongation factor 1-alpha 1 OS=Oryctolagus cuniculus GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A1_PONAB (Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF1A1 PE=2 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A1_PANTR (Elongation factor 1-alpha 1 OS=Pan troglodytes GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A1_MOUSE (Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef1a1 PE=1 SV=3)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A1_HUMAN (Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF1A1 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

BLAST of FC931655 vs. ExPASy Swiss-Prot
Match: EF1A1_HORSE (Elongation factor 1-alpha 1 OS=Equus caballus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 8.382e-89
Identity = 154/185 (83.24%), Postives = 169/185 (91.35%), Query Frame = 3

Query:   84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYTP 638
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAEM K SFKYAWVLDKLKAERERGITIDI+LWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ +  G FEAGISK+GQTREHALLA+TLGVKQ+I   NKMD+T P YS+ RY+EIVKEVS+Y+KK+GY P
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVKEVSTYIKKIGYNP 185

HSP 2 Score: 31.187 bits (69), Expect = 8.382e-89
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2

Query:  632 HPEKVPFVPISGFEGDNMI 688
            +P+ V FVPISG+ GDNM+
Sbjct:  184 NPDTVAFVPISGWNGDNML 202

The following BLAST results are available for this feature:

BLAST of FC931655 vs. ExPASy Swiss-Prot

BLAST of FC931655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
EF1A2_DROME	8.382e-89	84.32	Elongation factor 1-alpha 2 OS=Drosophila melanoga...	[more]
EF1A_CHICK	8.382e-89	83.24	Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE...	[more]
EF1A3_HUMAN	8.382e-89	83.24	Putative elongation factor 1-alpha-like 3 OS=Homo ...	[more]
EF1A1_RAT	8.382e-89	83.24	Elongation factor 1-alpha 1 OS=Rattus norvegicus G...	[more]
EF1A1_RABIT	8.382e-89	83.24	Elongation factor 1-alpha 1 OS=Oryctolagus cunicul...	[more]
EF1A1_PONAB	8.382e-89	83.24	Elongation factor 1-alpha 1 OS=Pongo abelii GN=EEF...	[more]
EF1A1_PANTR	8.382e-89	83.24	Elongation factor 1-alpha 1 OS=Pan troglodytes GN=...	[more]
EF1A1_MOUSE	8.382e-89	83.24	Elongation factor 1-alpha 1 OS=Mus musculus GN=Eef...	[more]
EF1A1_HUMAN	8.382e-89	83.24	Elongation factor 1-alpha 1 OS=Homo sapiens GN=EEF...	[more]
EF1A1_HORSE	8.382e-89	83.24	Elongation factor 1-alpha 1 OS=Equus caballus GN=E...	[more]

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Properties


Property Name	Value
Genbank description	C34107E10EF PostHarvP1 Citrus clementina cDNA clone C34107E10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931655 ID=FC931655; Name=FC931655; organism=Citrus clementina; type=EST; length=688bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACACCCCGAGAAAGTCCCAT
TCGTGCCCATCTCTGGTTTCGAGGGTGACAACATGATT