FC931656

Overview
NameFC931656
Unique NameFC931656
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931656 vs. ExPASy Swiss-Prot
Match: DHOM_YEAST (Homoserine dehydrogenase OS=Saccharomyces cerevisiae GN=HOM6 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.952e-37
Identity = 87/178 (48.88%), Postives = 120/178 (67.42%), Query Frame = 2
Query:    5 GIHVITPNKKANSGPLDQYLKLRPLQRKSYTHYFYEATVGAGLPIIGTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRS----FSEVVTEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLEL-SDLPVQSLVPEPLKACASAEEFMKQLPHLTKNWPSKDKRPRMQGKSL 523
            GI + TPNKKA S  L  +  L    + +    ++EATVGAGLPII  LR +++TGD + +IEGIFSGTLSY+FN F  +++    FS+VV  AK+ GYTEPDPRDDL+G DVARKV I+ R SG+++E  +  PVQSL+P+PL++  SA+EF+++L    K+     K    + K L
Sbjct:  109 GISIATPNKKAFSSDLATWKALFS-NKPTNGFVYHEATVGAGLPIISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEPDPRDDLNGLDVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVL 285          
BLAST of FC931656 vs. ExPASy Swiss-Prot
Match: AKH_BUCBP (Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=thrA PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.122e-36
Identity = 75/173 (43.35%), Postives = 111/173 (64.16%), Query Frame = 2
Query:    5 GIHVITPNKKANSGPLDQYLKLRPLQRKSYTHYFYEATVGAGLPIIGTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVTEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVQSLVPEPLKACASAEEFMKQLPHLTKNWPSKDKRPRMQGKSL 523
            G H++TPNKKAN+     Y  +R   +K    +FYE  VGAGLP+I  L+ LL TGD ++  +GI SG+LS++F       S SE   +A+  G+TEP+P+DDLSG DVARK++ILARE G KLEL D+ ++ L+P+     ++  +F+ +L  L + + ++ K+ R  GK L
Sbjct:  572 GFHIVTPNKKANTTNWKYYEDIRLAAQKEKKKFFYETNVGAGLPVIENLKNLLRTGDTLIHFKGILSGSLSFIFGKLEDNISLSEATKQAQSLGFTEPNPKDDLSGIDVARKLLILAREVGYKLELKDIKIEPLLPKEFNNISNTTDFITKLKELDQIFCNRVKKARKLGKRL 744          
BLAST of FC931656 vs. ExPASy Swiss-Prot
Match: DHOM_EMENI (Homoserine dehydrogenase OS=Emericella nidulans GN=AN2882 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.270e-36
Identity = 82/182 (45.05%), Postives = 116/182 (63.74%), Query Frame = 2
Query:    2 RGIHVITPNKKANSGPLDQYLKLRPLQRKSYTHYFYEATVGAGLPIIGTLRGLLETGDHILRIEGIFSGTLSYLFNSFV-----GTRSFSEVVTEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSD-LPVQSLVPEPLKACASA----EEFMKQLPHLTKNWPSKDKRPRMQGK 517
            +GI V+TPNKK  S  L  + ++     +     ++E+TVGAGLP+I TL+ L+ TGD + RIEG+FSGTLS+LFN+F       +  +SEVV++AKE GYTEPDPRDDL+G DVARK+ ILAR +GL ++  D  P++SL+P  L +  S+     +FM +LP       +  +     GK
Sbjct:  110 KGISVVTPNKKGFSSDLSLWKEIFAAAAEGKALVYHESTVGAGLPVISTLKDLVNTGDEVTRIEGVFSGTLSFLFNTFAPASGSSSAKWSEVVSQAKELGYTEPDPRDDLNGMDVARKLTILARIAGLDVQSPDSFPIESLIPAELTSLPSSADGIAQFMARLPEFDSQMAAIKEGAEKAGK 291          

HSP 2 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 36/73 (49.32%), Postives = 50/73 (68.49%), Query Frame = 1
Query:  466 FDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSEYIIAFTTKRYKEQPLIVRGPG 684
            FD ++A  ++ AE AG+V+RYVG VD   KE RV L+++ +D   A L GS+ II+F T+RY   PLIV+G G
Sbjct:  275 FDSQMAAIKEGAEKAGKVVRYVGSVDVAKKEVRVGLQQFDKDSAIAGLKGSDNIISFYTRRYGSNPLIVQGAG 347          
BLAST of FC931656 vs. ExPASy Swiss-Prot
Match: AKH_BUCAP (Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=thrA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.038e-35
Identity = 74/174 (42.53%), Postives = 107/174 (61.49%), Query Frame = 2
Query:    2 RGIHVITPNKKANSGPLDQYLKLRPLQRKSYTHYFYEATVGAGLPIIGTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVTEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVQSLVPEPLKACASAEEFMKQLPHLTKNWPSKDKRPRMQGKSL 523
            +G H+IT NKKAN+  L  Y ++R    K    + YE  VGAGLP+I TL+ L  TGD ++  +GI SG+LS++F         SE   EAK+ G+TEP+P DDLSG DVARK+++LARE G  +EL D+ ++ ++PE  K   ++EEF+ +L  L   +  +  + R  G  L
Sbjct:  569 KGFHIITSNKKANTDSLKYYSEIRTTALKENKKFLYETNVGAGLPVINTLQSLFSTGDCLISFKGILSGSLSFIFGKLEEGVLLSEATKEAKKLGFTEPNPFDDLSGIDVARKLLVLAREIGYSIELKDISIEPILPERFKKYQNSEEFLFKLKELDSFFSERVNKARDIGNVL 742          
BLAST of FC931656 vs. ExPASy Swiss-Prot
Match: AKH_BUCAI (Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=thrA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.524e-33
Identity = 72/171 (42.11%), Postives = 107/171 (62.57%), Query Frame = 2
Query:   11 HVITPNKKANSGPLDQYLKLRPLQRKSYTHYFYEATVGAGLPIIGTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRSFSEVVTEAKEAGYTEPDPRDDLSGTDVARKVIILARESGLKLELSDLPVQSLVPEPLKACASAEEFMKQLPHLTKNWPSKDKRPRMQGKSL 523
            HV+T NKKAN+   + Y K+R    ++   + YE  VGAGLP+I TL+ L ++GD+++  +GI SG+LS++F         S+   EAKE G+TEP+P DDLSG DVARK++ILARESG  +EL D+ ++ L+P   K     ++F+ +L  L   + +K K+    G  L
Sbjct:  574 HVVTSNKKANTSEWNYYKKIRKSVAQTGKKFLYETNVGAGLPVIETLQNLFKSGDNLICFKGILSGSLSFIFGRLEEGILLSQATREAKELGFTEPNPCDDLSGIDVARKLLILARESGYNIELKDIKIEPLLPNNFKIYEDTDKFLLKLKELDVYFSNKIKQALNVGNVL 744          
BLAST of FC931656 vs. ExPASy Swiss-Prot
Match: DHOM_METJA (Homoserine dehydrogenase OS=Methanocaldococcus jannaschii GN=hom PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 51/143 (35.66%), Postives = 72/143 (50.35%), Query Frame = 2
Query:   11 HVITPNKKANSGPLDQ-YLKLRPLQRKSYTHYFYEATVGAGLPIIGTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTR-SFSEVVTEAKEAGYTEPDPRDDLSGTDVARKVIILARE-SGLKLELSDLPVQS---LVPEPL 421
            HV+T NK    GPL   Y +L    +K    + +EA+VG  +PII   +  L  G+ IL I GI +GT +Y+          F   + EAKE G  E DP  D+ G D A K++ILA    G+   + D+ V+    + PE L
Sbjct:  117 HVVTANK----GPLALCYKELIEEAKKHGVIFRHEASVGGAMPIINLAKETL-AGNEILSIRGILNGTTNYILTKMEKEGLDFETALKEAKELGIAETDPTQDIEGLDTAAKIVILANSIMGMNKTIKDVKVKGISRITPEAL 254          
BLAST of FC931656 vs. ExPASy Swiss-Prot
Match: DHOM_BACSU (Homoserine dehydrogenase OS=Bacillus subtilis GN=hom PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 43/134 (32.09%), Postives = 76/134 (56.72%), Query Frame = 2
Query:   11 HVITPNKKANSGPLDQYLKLRPLQRKSYTHYFYEATVGAGLPIIGTLRGLLETGDHILRIEGIFSGTLSYLFNSFVGTRS-FSEVVTEAKEAGYTEPDPRDDLSGTDVARKVIILARES-GLKLELSDLPVQSL 406
            HV+T NK   +    + L      +++    ++EA+V  G+PI+ TL   L + D I ++ GI +GT +++    +  +S + EV+ EA++ G+ E DP  D+ G D ARK+ ILAR    + ++L D+ V+ +
Sbjct:   99 HVVTANKDLMAVYGSELLAEA---KENGCDIYFEASVAGGIPILRTLEEGLSS-DRITKMMGIVNGTTNFILTKMIKEKSPYEEVLKEAQDLGFAEADPTSDVEGLDAARKMAILARLGFSMNVDLEDVKVKGI 228          
The following BLAST results are available for this feature:
BLAST of FC931656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DHOM_YEAST2.952e-3748.88Homoserine dehydrogenase OS=Saccharomyces cerevisi... [more]
AKH_BUCBP1.122e-3643.35Bifunctional aspartokinase/homoserine dehydrogenas... [more]
DHOM_EMENI7.270e-3645.05Homoserine dehydrogenase OS=Emericella nidulans GN... [more]
AKH_BUCAP8.038e-3542.53Bifunctional aspartokinase/homoserine dehydrogenas... [more]
AKH_BUCAI7.524e-3342.11Bifunctional aspartokinase/homoserine dehydrogenas... [more]
DHOM_METJA5.606e-1235.66Homoserine dehydrogenase OS=Methanocaldococcus jan... [more]
DHOM_BACSU1.249e-1132.09Homoserine dehydrogenase OS=Bacillus subtilis GN=h... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107E11EF PostHarvP1 Citrus clementina cDNA clone C34107E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931656 ID=FC931656; Name=FC931656; organism=Citrus clementina; type=EST; length=686bp
GAGAGGAATTCATGTAATCACCCCAAACAAAAAAGCAAATTCCGGACCGC
TGGACCAGTATTTAAAGCTGAGGCCTCTTCAACGGAAATCCTATACACAT
TACTTCTATGAAGCAACTGTTGGAGCTGGTCTTCCAATTATCGGCACTTT
AAGGGGTCTGCTGGAAACCGGGGACCATATATTGCGCATTGAAGGCATTT
TCAGTGGGACTTTGAGTTATCTTTTTAACAGCTTTGTAGGCACAAGATCA
TTCAGTGAGGTAGTGACAGAGGCGAAAGAAGCAGGTTATACTGAACCTGA
TCCAAGGGATGATCTATCTGGAACAGATGTTGCCAGAAAGGTGATAATTC
TTGCCCGAGAATCCGGTCTTAAGCTGGAACTTTCTGATCTCCCTGTTCAA
AGTCTTGTGCCAGAACCATTAAAAGCTTGTGCATCTGCTGAAGAGTTTAT
GAAGCAATTACCACATTTGACAAAGAATTGGCCAAGCAAAGACAAGAGGC
CGAGGATGCAGGGGAAGTCCTTAGATATGTGGGAGTGGTGGATGCTATCA
ACAAAGAGGGGCGTGTAGAGTTGCGAAGATACAAGAGAGATCATCCATTC
GCACAGCTCTCTGGTTCTGAATACATCATAGCTTTCACAACAAAACGATA
CAAGGAGCAGCCACTTATCGTCCGTGGACCTGGTGC
back to top