FC931659

Overview
NameFC931659
Unique NameFC931659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13391 contig Ccv1_Contig13391:131..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.444e-62
Identity = 113/199 (56.78%), Postives = 150/199 (75.38%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL 653
            MFRNQYD+DVT WSP GRL QVEYAMEAVK G+A +GL++K + VL  + K  SELS  Q+KI  +DDH+G++IAGLTAD RVLSRY+RSEC+NY ++Y++  PV RL+  L +K Q  TQR  +RPYGVGLLVAG DE+G H+Y   PS  +F  +A +IGSRSQ+A+TYLE+    F +S+++++I+  + AI  TL
Sbjct:    1 MFRNQYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQRKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDERGPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTL 199          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 4.913e-61
Identity = 108/195 (55.38%), Postives = 145/195 (74.36%), Query Frame = 3
Query:   78 TDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE 662
            +DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL  + +A SEL++HQKKI  VD+HIG++IAGLTAD R+L  +MR EC++  + ++ PLPV RLV  +  K Q+ TQR  +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+ YLER    F++    +L+K  L A+RETL  E
Sbjct:    7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAE 201          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.266e-60
Identity = 113/199 (56.78%), Postives = 145/199 (72.86%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL 653
            MFRNQYD D TTWSP GRL QVEYA+EA+KQGSA +GL SKTH VL  + +   ELSS+QKK+ ++DDHIG+AIAGL  D RVLS YM+ E ++    +  P+PV RL+ ++A+KAQ+ TQ   +RPYGVG LV G DE G HL    PSG   EY   ++GSRSQ+A+TY+ER  + F +S+RE+LI  AL A+R+TL
Sbjct:    1 MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTL 199          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_CAEEL (Proteasome subunit alpha type-1 OS=Caenorhabditis elegans GN=pas-6 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.932e-57
Identity = 103/202 (50.99%), Postives = 148/202 (73.27%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE 662
            MFRNQYD DVT WSP GRL QVEYA+EA+KQGSA +G++S+TH V+  + +A ++LSSHQKK++++D H GV+IAGL +DGR+L+RY+++EC ++ + Y+  +P+ +L   +  K Q  TQ   +RP+GVG+L+AG D+ GAH+    PS         +IG+RSQ+A+TYLER  +NF +ST E LI  AL+A+R+TL  E
Sbjct:    1 MFRNQYDGDVTVWSPQGRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSHQKKVYEIDTHAGVSIAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGILIAGYDKDGAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHALLALRDTLPAE 202          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.759e-56
Identity = 105/202 (51.98%), Postives = 149/202 (73.76%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKAN-SELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG 659
            MF+NQYDT+ TTWSP GRLFQVEYA EAV  GSAA+G ++K  VVL  + ++  ++ SS+Q+K+FK+DDH+G+AIAGL ADGR+L+R++R+EC+NY Y ++S  P+  +   + +K Q   Q + KRP+GVGLL+AG D  G HLY+  PSG+ F+++A A+G RSQAA+TYLE+ FE+F +   ++LI  AL A+     G
Sbjct:    1 MFKNQYDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKRSPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSG 202          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.693e-53
Identity = 105/202 (51.98%), Postives = 141/202 (69.80%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKAN-SELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG 659
            MF+NQYDTD TTWSP GRLFQVEYA EAV  GSAA+G++   +VVL  + +   S LSS+Q+K FK+D+H+G+AI+GL ADGR LSR++R+EC+NY Y ++S  P+  L   +  K Q   Q + KRP+GVGLL+AG D +G  LY   PSG+ F+++A A+G RSQAA+TYLER F  F     ++L+  AL A+     G
Sbjct:    1 MFKNQYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKRNPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQGPRLYQTVPSGDVFDFKATAMGLRSQAARTYLERHFRGFPACDLDELVMHALRALGAATSG 202          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_YEAST (Proteasome component PRE5 OS=Saccharomyces cerevisiae GN=PRE5 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.609e-51
Identity = 108/206 (52.43%), Postives = 135/206 (65.53%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF--SESTREDLIKDALMAIRETLQGETL 668
            MFRN YD D  T+SP GRLFQVEYA+EA+KQGS  +GLRS TH VL  + +   ELSS+QKKI K D+H+G+++AGL  D RVLS Y+R +C   S  +   L V R    L DKAQ  TQ    RPYGVGLL+ G D+ GAHL    PSGN  E    AIG+RSQ AKTYLER  + F   +   ++LIK  + AI ++L+ E+L
Sbjct:    1 MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESL 206          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.475e-38
Identity = 89/208 (42.79%), Postives = 128/208 (61.54%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL-SSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            M R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVLG   +  S L  SH  +K+F++D HIG AI+GLTAD R +  + R +  N+ +TY+ P  +      + D A      +   +R   RP+GV LL+AG+DE G  LY++ PSG YF Y+A AIGS S+ AK+ L + F    + T E+     L  +R+ ++
Sbjct:    3 MTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFH--KDMTLEEAEVLILKVLRQVME 208          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.102e-36
Identity = 85/206 (41.26%), Postives = 131/206 (63.59%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKS 674
            +YD+  T +SP GRL+QVEYAMEA+    +AIG+ +K  VVL    K  S+L   S+  +K++K+DDH+  A+AG+ +D  +L    R +   Y+++Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A AIG+ +QAA++ L++ +++  + TRED +K AL A+ +T+   +L S
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILAKDGVVLIGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKD--DVTREDAVKLALKALSKTMDSTSLTS 207          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.592e-35
Identity = 85/205 (41.46%), Postives = 119/205 (58.05%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G++ +  VVLG   +  S+L   +  +K++++D HIG A AGL AD RVL    R E   Y YTY  P+ V  LV  + D  QV TQ    RP+G  LL+AG+D KG  L+   PSG   E++A AIG   Q A    E  +    + T ++ I+ A+ A+ E  + ET   ++
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYR--EDMTLQEAIELAVRALYEASREETTADNL 212          
The following BLAST results are available for this feature:
BLAST of FC931659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA1_DROME4.444e-6256.78Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA1_CHICK4.913e-6155.38Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA1_SCHPO9.266e-6056.78Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_CAEEL1.932e-5750.99Proteasome subunit alpha type-1 OS=Caenorhabditis ... [more]
PSA1_TRYCR4.759e-5651.98Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_TRYBR1.693e-5351.98Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA1_YEAST4.609e-5152.43Proteasome component PRE5 OS=Saccharomyces cerevis... [more]
PSA5_SCHPO4.475e-3842.79Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA4_SPIOL1.102e-3641.26Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSMA_METKA1.592e-3541.46Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]

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Properties
Property NameValue
Genbank descriptionC34107F02EF PostHarvP1 Citrus clementina cDNA clone C34107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931659 ID=FC931659; Name=FC931659; organism=Citrus clementina; type=EST; length=682bp
GTCCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACC
CTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCC
CGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAG
GCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGC
GTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAA
GGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCC
GTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACT
TACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAA
GGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCC
TGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGC
CCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATC
TCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAGAAT
CTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAAACC
TTACAAGGAGAAACACTAAAGAGTTCTATTTG
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