FC931659

Overview
NameFC931659
Unique NameFC931659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.483e-28
Identity = 78/203 (38.42%), Postives = 119/203 (58.62%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSEC-INYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE 662
            ++Y   +TT+SP+G+L Q++YA+ AVKQG  ++G+++   VV+    K++S L+  +   K+  +   IG   +G+  D RVL    R     +Y   Y    P   LV ++A   Q  TQ    RP+GV LL+AG DE  G  LY   PSG+YF ++A AIG  S AAKT+LE+R+ +  E   ED I  AL+ ++E+++GE
Sbjct:    3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND--ELELEDAIHIALLTLKESVEGE 203          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 71/174 (40.80%), Postives = 99/174 (56.90%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE 587
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G+++   VVL    +  S L   +  +KIF++DDHIG A +GL AD R L    R E      +Y+  + V  +  ++ D  Q  TQ    RPYG  LL+AG+D+K   L+   PSG   EY+A AIG+   A     E  ++
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYK 180          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 76/192 (39.58%), Postives = 105/192 (54.69%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI 641
            YD  +T +SP GRLFQVEYA EAVK+G+ A+G+++   VVL    +  S L   +  +KIF++DDHIG A +GL AD R L    R E      +Y+  + V  +  ++ D  Q  TQ    RPYG  LL+AG+D+    L+   PSG   EY+A AIG+   A         E F    RED+  DA + +
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAV-------VEVFEADYREDMNIDAAILL 193          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 73/200 (36.50%), Postives = 116/200 (58.00%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            ++YD  VT +SP GRL QVEYA EAV++GS A+G+R    VVLG   K+ ++L   +  +KI  V DH+ +A AGLT D R+L    + EC ++    E P+ +  +   +A   Q  TQ + +RP+G+  L+ G D  G+ +L+   PSG ++EY+A A G  ++  + + E+++     ST    +K A+ A+ E  Q
Sbjct:    3 SRYDRAVTIFSPDGRLLQVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTVRKIC-VLDHVVMAFAGLT-DARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQ 200          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.221e-27
Identity = 69/183 (37.70%), Postives = 104/183 (56.83%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTRED 614
            YD  +T +SP GRL+QVEYA EAVK+G+A++G+R+   +VL    ++ S L   +  +KI K DDH+G+A AG  AD R L  + R +       Y  P+ +  L   + D  Q  TQ    RP+GV LL+ G+++    LY   PSG  +E++A +IG+     + +LE   EN++E    D
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDGSPRLYETDPSGTPYEWKAVSIGADRSDLQEHLE---ENYTEELSLD 189          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.221e-27
Identity = 65/173 (37.57%), Postives = 101/173 (58.38%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 578
            +YD  VT +SP G L QVEYA EAV++GS  +GLR+   +V+G   ++  +L   +  +KI  +DDH+ +  +GLTAD R+L    + E  ++   +E P  V  +   +A   Q  TQ + +RP+G+  LV G DE G  HL+   PSG ++E++A   G  SQ  + Y+E+
Sbjct:    4 RYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDLQEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEK 176          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.221e-27
Identity = 79/214 (36.92%), Postives = 116/214 (54.21%), Query Frame = 3
Query:   63 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPL-------PVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSS 677
            R++YD  V T+SP GRLFQVEYA+EA+K GS AIG+ +   VVL    +  S L   S  +KI +VD HIG A +GL AD R L    R EC N+ + Y   +        V  L +Q  D        +  RP+GV +L AG++     L++  PSG +  + A AIGS S+ A+  L+  F    + T ++ I  +L  +++ ++ E L S+
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFR--PDLTLDEAIDISLNTLKQVME-EKLNST 215          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.221e-27
Identity = 68/178 (38.20%), Postives = 105/178 (58.99%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN 590
            +YD+  T +SP GRL+QVEYAMEA+      +G+ S   +V+    K   +L   S   +K++++ D+I   +AG+TAD  +L  ++R    +Y  +Y   +PV +LV  L ++ Q  TQ   KRP+GV LL  G D+  G  LY + PSGNY  ++A  IGS  QAA T L++ +++
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKS 181          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.721e-27
Identity = 74/195 (37.95%), Postives = 105/195 (53.85%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRE 647
            YD  +T +SP GRL+QVEYA EAVK+G+A+IG+R+   VVL    +  S L   S  +KI K DDHIG+A AG  AD R L  + R +       Y  P+ V  L  ++ D  Q  TQ    RP+GV L++ G+      L+   PSG  +E++A A+G+     + YLE  + E        DL   AL ++ +
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGGIVNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASVND 204          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.554e-27
Identity = 76/194 (39.18%), Postives = 109/194 (56.19%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRE 647
            YD  +T +SP GRL+QVEYA EAVK+G+A+IG+R+   VVL    +  S L   S  +K+ K+DDH+G A AG  AD R L  + R +       Y+ P+ V  L   + D  Q  TQ    RP+GV LL+AG++     L+   PSG   E++A AIGS     + +LE  ++  +  + +D I  AL A+ E
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEPRLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYD--AGLSVDDGIDLALRALNE 201          
The following BLAST results are available for this feature:
BLAST of FC931659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2_YEAST5.483e-2838.42Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSMA_METTE9.352e-2840.80Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_METMA9.352e-2839.58Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSA71_DROVI9.352e-2836.50Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSMA_HALWD1.221e-2737.70Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA73_DROME1.221e-2737.57Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSA5_DROME1.221e-2736.92Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA4_CAEEL1.221e-2738.20Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSMA1_HALMA2.721e-2737.95Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSMA_HALSA3.554e-2739.18Proteasome subunit alpha OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionC34107F02EF PostHarvP1 Citrus clementina cDNA clone C34107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931659 ID=FC931659; Name=FC931659; organism=Citrus clementina; type=EST; length=682bp
GTCCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACC
CTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCC
CGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAG
GCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGC
GTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAA
GGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCC
GTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACT
TACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAA
GGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCC
TGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGC
CCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATC
TCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAGAAT
CTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAAACC
TTACAAGGAGAAACACTAAAGAGTTCTATTTG
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