FC931659

Overview
NameFC931659
Unique NameFC931659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 60/195 (30.77%), Postives = 102/195 (52.31%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSE--LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE-NFSESTREDLIKDALMAI 641
            +D  +T +SP GRL+QVEYA +A+ Q +   + L+S    V+    K   +  +      +F++   IG A+ G  AD R   +  R E  N+ Y Y   +PV  L  ++AD  QV TQ +  RP G  +++   D E G  +Y   P+G +  ++A ++G+++  A +YLE++++ N SE     L    L ++
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSV 203          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.076e-19
Identity = 64/212 (30.19%), Postives = 108/212 (50.94%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSA-AIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-----ENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            YD  +T +SP GRL+QVEYA +A  Q +  ++ +R K   V+    K   +L   +    IF +   IG+ + G   D R  +   ++E   + Y Y   +P   L  ++A+ +Q+ TQR++ RP GV L    +DE+ G  +Y   P+G Y  Y+A A G + Q   T LE  F     ++ +E + E +++ A+  + + L  E  K+ +
Sbjct:   12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDL 223          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 69/218 (31.65%), Postives = 110/218 (50.46%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGL---DEKGA---HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN--FSESTREDLIKDALMAIRETLQGETLKSS 677
            M R  +D  +T +SP G L+QVEYA +AV   G   + +R K  V++   +    +L   +    ++ V+D+ GV I G   DG+ L +  R+E   Y Y Y  P+ V  L     D AQV TQ++  R  G  +   G+   DE GA    +Y   P+G      A A+G +   A  +LE++ +N  F   ++++    AL A++  L GE+L++S
Sbjct:    1 MSRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETITSLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGG-AAVHACAVGKKQIEACAFLEKKQKNAPFHTLSQKEAAMIALAALQSAL-GESLRAS 216          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 50/198 (25.25%), Postives = 96/198 (48.48%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL 653
            +D  +T +SP GR++QVEYA +A+   +  A+ ++     V+    +    L  +     ++++   +G    G+  D +   +  + E  ++ Y     +P   L  ++AD  Q  TQ +  R  G  LL    D EKG  +Y   P+G Y   +  ++G +   A ++LE++ +  SE T  + I+ A+ A++ +L
Sbjct:    9 FDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTSVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSL 206          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 50/176 (28.41%), Postives = 84/176 (47.73%), Query Frame = 3
Query:  147 QGSAAIGLRSKTHVVLGCVNKAN-SELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET 665
            +G+  +G+  K  VV     +A+   L +H+   KIFK+D+HI   IAG  AD + L +Y+++E   Y       + +       A+        S   P+ V  L+ G+DE GA +Y   PSG     +  + GS S  A   LE R+ +  E   ++ +  A+ AI+  ++ +T
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAAN----ILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSD--ELYVDEAVDVAIRAIKSAMERDT 177          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA1_ENCCU (Probable proteasome subunit alpha type-1 OS=Encephalitozoon cuniculi GN=PRE5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 51/200 (25.50%), Postives = 95/200 (47.50%), Query Frame = 3
Query:   93 WSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGV-GLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIR------ETLQGETLK 671
            ++P G + Q+++  +  + G  A+GL++++  VL   N+  S L+  QKK+F +D       +G+T DG  +  Y+  + +         +    +   L       T    +R YGV GL +   D  G  L    P G+  E +   IG R+Q+++T LE   E + +   E+L++  +MA++      + L GE ++
Sbjct:   22 FNPEGCVKQLDFIRQTTELGGTAVGLKNRSVGVLIAHNERRSRLADIQKKVFSIDRKSLFTFSGITNDGLQIVDYLIDKSVREEVIKGRAIHFLDVFEDLLRDVFERTILDGRRLYGVSGLYMTEYD--GIRLVEFNPKGHVREVKGMGIGCRAQSSRTVLEAYCEEYEKMGVEELVRIGIMALKNAHPEDDALTGENVE 219          
The following BLAST results are available for this feature:
BLAST of FC931659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA6_DROME4.652e-1930.77Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA6_YEAST6.076e-1930.19Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA1_TRYBB4.354e-1731.65Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA6_CAEEL9.079e-1525.25Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSMB_METTH2.734e-1128.41Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSA1_ENCCU6.090e-1125.50Probable proteasome subunit alpha type-1 OS=Enceph... [more]

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Properties
Property NameValue
Genbank descriptionC34107F02EF PostHarvP1 Citrus clementina cDNA clone C34107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931659 ID=FC931659; Name=FC931659; organism=Citrus clementina; type=EST; length=682bp
GTCCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACC
CTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCC
CGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAG
GCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGC
GTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAA
GGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCC
GTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACT
TACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAA
GGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCC
TGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGC
CCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATC
TCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAGAAT
CTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAAACC
TTACAAGGAGAAACACTAAAGAGTTCTATTTG
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