FC931659

Overview
NameFC931659
Unique NameFC931659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.120e-34
Identity = 83/211 (39.34%), Postives = 124/211 (58.77%), Query Frame = 3
Query:   63 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVL    +  S L   S  +KI ++DDHIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+ +F    + T ++    A+  +++ ++ +   +++
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFN--KDITLQEAETIAVSILKQVMEEKVTPNNV 213          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.120e-34
Identity = 82/195 (42.05%), Postives = 122/195 (62.56%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS-SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRE 647
            + Y   +TT+SP+G+L Q+E+A++A   G +AIG+++K  VVL    K +S +  +  +KI  + ++IG+  AG+  D RVL +  R E   Y   Y+  +PV +LV +LA   Q  TQ    RP+GV LLVAG DEKG HLY   PSG+YF ++A AIG    ++KT+LE+R+ +  E   ED I+ AL+ I+E
Sbjct:    3 SDYSFSLTTFSPSGKLVQIEHALQAAASGGSAIGIKAKNGVVLITEKKLHSLVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEI--EDAIQTALITIKE 195          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.687e-34
Identity = 81/179 (45.25%), Postives = 109/179 (60.89%), Query Frame = 3
Query:   63 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 584
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIG+++K  VVL    +  S L   S  +KI ++DDHIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++  A AIGS S+ A + L+ +F
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQF 183          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 83/211 (39.34%), Postives = 123/211 (58.29%), Query Frame = 3
Query:   63 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL++K  VVL    +  S L   S  +KI ++D+HIG A++GL AD R L  + R E  N+ ++Y  P+ V      L D A       + S  RP+GV LL+AG DE G  LYY  PSG +++    AIGS S+ A + L+ +F    + T ++    AL  +++ ++ +   +++
Sbjct:    5 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFN--KDLTLQEAETIALSILKQVMEEKVTPNNV 213          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 77/194 (39.69%), Postives = 114/194 (58.76%), Query Frame = 3
Query:   84 VTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG 659
            +TT+SP+GRL Q+EYA  A  +G+ A+G+++   VV+    K  S L+      K+F +DDH+G   +G+  D RVL    R  C  Y  TY  P+P+ +LV Q++   Q  TQ    RP+G  LLVAG D +G HLY   PSG ++ ++A +IG  S  A+T+LE+R+ N  E   ED +  AL+ ++E   G
Sbjct:    8 LTTFSPSGRLVQIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLTLHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSRGNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTN--EMEIEDAVHTALLTLKEGFDG 199          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.141e-33
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET 665
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S+L   S  +KIF +DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q  TQ    RP+G  LL+AG++EK   L+   PSG YFE++A AIGS    A    E  + +  +  ++D IK A++A+ +TL+  T
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRD--DIGKDDAIKLAILALAKTLEEPT 206          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.141e-33
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET 665
            YD  +T +SP GRLFQV YA EAVK+G+ A+G++ K  VVL    +  S+L   S  +KIF +DDHI  A +G+ AD RVL    R E   Y  TY  P+P+  LV ++ D  Q  TQ    RP+G  LL+AG++EK   L+   PSG YFE++A AIGS    A    E  + +  +  ++D IK A++A+ +TL+  T
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK-PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRD--DIGKDDAIKLAILALAKTLEEPT 206          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.141e-33
Identity = 79/200 (39.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            ++YD  +T +SP G LFQVEYA EAVK+GS A+G+R    VVLG   K+ ++L   +  +KI  +DDH+ +A AGLTAD RV+    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D+ G   LY   PSG Y  ++A AIG  ++  + +LE+ +   + S  ++ IK A+ A+ E +Q
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQ 202          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.945e-33
Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            +YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+H+ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  ++  + +LE+ + + + ++  D IK A+ A+ E +Q
Sbjct:    4 RYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQ 202          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.945e-33
Identity = 78/200 (39.00%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            ++YD  +T +SP G LFQVEYA EAVK+GS A+G+R    VVLG   K+ ++L   +  +KI  +DDH+ +A AGLTAD RV+    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D+ G   LY   PSG Y  ++A AIG  ++  + +LE+ +   + ++  + IK A+ A+ E +Q
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDNEAIKLAIKALLEVVQ 202          
The following BLAST results are available for this feature:
BLAST of FC931659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA5B_ARATH5.120e-3439.34Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA2_DICDI5.120e-3442.05Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA5A_ARATH6.687e-3445.25Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSA5_SOYBN8.733e-3439.34Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA2_TRYBB8.733e-3439.69Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSMA_THEK11.141e-3342.50Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO1.141e-3342.50Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSA7L_MOUSE1.141e-3339.50Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7_CARAU1.945e-3339.20Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSA7L_MACFA1.945e-3339.00Proteasome subunit alpha type-7-like OS=Macaca fas... [more]

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Properties
Property NameValue
Genbank descriptionC34107F02EF PostHarvP1 Citrus clementina cDNA clone C34107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931659 ID=FC931659; Name=FC931659; organism=Citrus clementina; type=EST; length=682bp
GTCCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACC
CTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCC
CGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAG
GCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGC
GTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAA
GGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCC
GTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACT
TACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAA
GGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCC
TGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGC
CCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATC
TCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAGAAT
CTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAAACC
TTACAAGGAGAAACACTAAAGAGTTCTATTTG
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