FC931659

Overview
NameFC931659
Unique NameFC931659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.792e-32
Identity = 79/207 (38.16%), Postives = 120/207 (57.97%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+ P+PV +LV + A   Q  TQ    RP+GV LLVAG D+KG  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +GE    +I
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGFEGEISSKNI 208          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.258e-32
Identity = 77/198 (38.89%), Postives = 118/198 (59.60%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +DD++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQ 200          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.258e-32
Identity = 77/198 (38.89%), Postives = 118/198 (59.60%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +DD++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.258e-32
Identity = 81/208 (38.94%), Postives = 120/208 (57.69%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSEC-INYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            ++Y   +TT+SP G+L Q+EYA+ AV  G  ++G+++   VVL    K  SEL+  +  +K+  +   IG+  +G+  D RVL    R      Y   Y    P   LV ++A   Q  TQ    RP+GV LLVAG+DEKG  LY   PSG YF ++A AIG  S AAKT+LE+R+ +  E   +D +  A++A++ET +GE  + +I
Sbjct:    3 DKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYND--ELELDDAVHTAILALKETFEGELTEDNI 208          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 78/204 (38.24%), Postives = 121/204 (59.31%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETL 668
            +YD+  T +SP GRL+QVEYAMEA+    +A+G+ +   VVL    K  S+L   S   +K++K+D H+  A+AG+ +D  +L    R     Y+ +Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ SQAA++ L++ + +    TRE+ +  AL  + +T+   +L
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRD--GMTREEAVALALKVLSKTMDSTSL 205          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 78/204 (38.24%), Postives = 121/204 (59.31%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETL 668
            +YD+  T +SP GRL+QVEYAMEA+    +A+G+ +   VVL    K  S+L   S   +K++K+D H+  A+AG+ +D  +L    R     Y+ +Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ SQAA++ L++ + +    TRE+ +  AL  + +T+   +L
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRD--GMTREEAVALALKVLSKTMDSTSL 205          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.068e-31
Identity = 78/206 (37.86%), Postives = 121/206 (58.74%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIA------GLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            ++YD  +T +SP G LFQVEYA EAVK+GS A+G+R    VVLG   K+ ++L   +  +KI  +DDH+ +A A      GLTAD RV+    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D+ G + LY   PSG Y  ++A AIG  ++  + +LE+ +   + ++  + IK A+ A+ E +Q
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQ 208          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.068e-31
Identity = 78/204 (38.24%), Postives = 121/204 (59.31%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETL 668
            +YD+  T +SP GRL+QVEYAMEA+    +A+G+ +   VVL    K  S+L   S   +K++K+D H+  A+AG+ +D  +L    R     Y+ +Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ SQAA++ L++ + +    TRE+ +  AL  + +T+   +L
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRD--GLTREEAVALALKVLSKTMDSTSL 205          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.068e-31
Identity = 78/204 (38.24%), Postives = 121/204 (59.31%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETL 668
            +YD+  T +SP GRL+QVEYAMEA+    +A+G+ +   VVL    K  S+L   S   +K++K+D H+  A+AG+ +D  +L    R     Y+ +Y+ P+PV +LV  L D  Q  TQ    RP+GV  L AG D+  G  LY + PSGNY  ++A A+G+ SQAA++ L++ + +    TRE+ +  AL  + +T+   +L
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRD--GLTREEAVALALKVLSKTMDSTSL 205          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVV-LGCVNKANSELSSHQ-KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ-GETL 668
            YD  +T +SP G L+QV+YA EAVK+G   +G+++K  VV LG   KA+  L     +K+F +DDH+G + AGL +DGR+L  Y R+  + +   Y+ P+ +  L   ++D  Q+ TQ    RP+GV L+V G+D     L+   PSG +  YQA AIG     A  YLE+ ++   + + E+ I  AL A++ TL+ GE L
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGVTKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYK--EDLSVEETILLALNALKVTLKPGEKL 209          
The following BLAST results are available for this feature:
BLAST of FC931659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2A_ARATH4.792e-3238.16Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA7_MOUSE6.258e-3238.89Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_BOVIN6.258e-3238.89Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA2_SCHPO6.258e-3238.94Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA4A_ORYSJ8.174e-3238.24Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI8.174e-3238.24Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA7L_HUMAN1.068e-3137.86Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA4B_ORYSJ1.068e-3138.24Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI1.068e-3138.24Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSMA_METS51.394e-3139.11Proteasome subunit alpha OS=Metallosphaera sedula ... [more]

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Properties
Property NameValue
Genbank descriptionC34107F02EF PostHarvP1 Citrus clementina cDNA clone C34107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931659 ID=FC931659; Name=FC931659; organism=Citrus clementina; type=EST; length=682bp
GTCCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACC
CTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCC
CGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAG
GCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGC
GTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAA
GGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCC
GTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACT
TACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAA
GGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCC
TGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGC
CCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATC
TCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAGAAT
CTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAAACC
TTACAAGGAGAAACACTAAAGAGTTCTATTTG
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