FC931659

Overview
NameFC931659
Unique NameFC931659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 76/198 (38.38%), Postives = 118/198 (59.60%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R +  VVLG   K+ ++L   +  +KI  +DD++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 78/207 (37.68%), Postives = 119/207 (57.49%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IG   +G+  D RVL R  R +   Y   Y+ P+PV +LV + A   Q  TQ    RP+GV LLVAG D+KG  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +GE    +I
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGFEGEISSKNI 208          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 77/200 (38.50%), Postives = 118/200 (59.00%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD--EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R   +VVLG   K+ ++L   +  +KI  +DDHI +A AGL AD RVL    R EC ++  T E P+ V  +   +A   Q  TQ    RP+G+  L+ G D       LY   PSG +  ++A A G  S + + +LE+   NF E++ ++ +K A+ A+ E ++
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDNVVLGVEKKSTAKLQDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEK---NFKETSGQETVKLAIRALLEVVE 199          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 76/198 (38.38%), Postives = 118/198 (59.60%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 76/198 (38.38%), Postives = 118/198 (59.60%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            YD  +T +SP G LFQVEYA EAVK+GS A+G+R K  VVLG   K+ ++L   +  +KI  +D+++ +A AGLTAD R++    R EC ++  T E P+ V  +   +A   Q  TQ + +RP+G+  L+ G D  G   LY   PSG Y  ++A AIG  +++ + +LE+ + + +  T +  IK  + A+ E +Q
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQ 200          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 76/210 (36.19%), Postives = 118/210 (56.19%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            M    Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+++   VVL    K  S L   Q   K+  +  HIG+  +G+  D RVL R  R     Y   Y+ P+P  +LV ++A   Q  TQ    RP+GV LL+AG DE   +L+ + PSG YF ++A A+G      KT+LE+R+    E   ED I  A++ ++E+ +G+  + +I
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE--LEDAIHTAILTLKESFEGQMTEDNI 208          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.378e-31
Identity = 74/214 (34.58%), Postives = 122/214 (57.01%), Query Frame = 3
Query:   63 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWK-----RPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKT-YLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            + +YD  V T+SP GR+FQ+EYA+EA+K GS ++G+++   V++    +  S L   S   KI ++D HIG  ++G+ AD R+L  + R E  N+ +TY+ P+ V    +   D +    +   +     RP+GV LL+AG+DE G  L+   PSG Y  Y A AIG  ++AA+T + ER   N +    E+L    +  +R+ ++ +  K+S+
Sbjct:    5 KTEYDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPSSVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDENGPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENL---TVQILRQVMEEKLTKTSV 215          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA--HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            +YD  +T +SP G LFQVEYAMEAV++G+AA+G+R    VVLG   K+  +L   +  +KI  +DDHI +A AGL AD RVL    R EC ++  T E P+ V  +   +A   Q  TQ    RP+G+  L+ G D       LY   PSG +  ++A A G  S + + +LE+   N+ E++ ++ +K A+ A+ E ++
Sbjct:    3 RYDRAITVFSPDGHLFQVEYAMEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSVRKIVNLDDHIALACAGLKADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEK---NYKETSGQETVKLAIRALLEVVE 199          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 77/208 (37.02%), Postives = 119/208 (57.21%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETL 668
            M   +YD+  T +SP GRL+QVEYA+E++     AIG+ +   +VL    K  S L    +  +K++K++D I VA+AGLTAD  +L    R    NY  TY   +PV  LV +L+D  Q  TQ    RP+GV  + AG D++ G  LY + PSGNY  ++A ++G+ + AA+T L+  +++  +   +D I+ AL  + +T     L
Sbjct:    1 MGSRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD--DMKVDDAIELALKTLSKTTDSSAL 206          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.298e-31
Identity = 80/202 (39.60%), Postives = 117/202 (57.92%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVL-SRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE 662
            ++Y   +TT+SP+G+L Q+EYA+ AV QG  A+G+++   +VL    K++S L+  S   KI  +  +IG+  +G+  D RVL  R  +     Y   Y    P   LV  +A   Q  TQ    RPYGV LL+AG DE G  LY   PSG+YF ++A AIG  +  AKT+LE+R+    E   ED +  AL+ ++ET++GE
Sbjct:    3 DRYSFSLTTFSPSGKLVQIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPSSLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQDVARVMQEATQSGGVRPYGVSLLIAGWDEGGPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLE--LEDAVHIALLTLKETIEGE 202          
The following BLAST results are available for this feature:
BLAST of FC931659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA7_HUMAN1.394e-3138.38Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA2B_ARATH1.394e-3137.68Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA7_CICAR1.821e-3138.50Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA7B_XENLA1.821e-3138.38Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA1.821e-3138.38Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA2_XENLA1.821e-3136.19Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA5_TRYBB2.378e-3134.58Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA7_SOLLC5.298e-3138.50Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA4_YEAST5.298e-3137.02Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA2_NEUCR5.298e-3139.60Probable proteasome subunit alpha type-2 OS=Neuros... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107F02EF PostHarvP1 Citrus clementina cDNA clone C34107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931659 ID=FC931659; Name=FC931659; organism=Citrus clementina; type=EST; length=682bp
GTCCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACC
CTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCC
CGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAG
GCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGC
GTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAA
GGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCC
GTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACT
TACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAA
GGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCC
TGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGC
CCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATC
TCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAGAAT
CTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAAACC
TTACAAGGAGAAACACTAAAGAGTTCTATTTG
back to top