FC931659

Overview
NameFC931659
Unique NameFC931659
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13391 contig Ccv1_Contig13391:131..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 72/199 (36.18%), Postives = 116/199 (58.29%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            YD  +T +SP GRLFQVEYA +AVK  G  +IG+R K  V +    K   +L   S    +F +  +IG+   G+TAD R L +  R++   + +TY   +PV  L   +ADK+QV TQ ++ RP GV  +V G+DE+   L Y C P+G+++ ++A + G + Q A  +LE++ +     T ++ ++ A+ A++  LQ
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQ 207          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 79/211 (37.44%), Postives = 127/211 (60.19%), Query Frame = 3
Query:   63 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA----QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSS 677
            R++YD  V T+SP GRLFQVEYA+EAVK GS +IG+++   V+L    ++ S+L  +   +KI KVD HIGV  AGL AD R L    + E  N+ +TY   + V  +   +A+ A        + S  RP+GV +L AG+D++GA L++  PSG + + +A +IG+ S  A+  L+ ++ +    T ++ +K AL  +++ ++ E L S+
Sbjct:    5 RSEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGVDQEGAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHD--ALTIKEGLKMALAILKQVME-EKLNSA 212          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 75/207 (36.23%), Postives = 119/207 (57.49%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+  +PV +LV + A   Q  TQ    RP+GV LL+AG D+ G  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +G+   ++I
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI 208          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 75/207 (36.23%), Postives = 119/207 (57.49%), Query Frame = 3
Query:   66 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            +QY   +TT+SP+G+L Q+E+A+ AV  G  ++G+++   VV+    K  S L   +  +KI  +  +IGV  +G+  D RVL R  R +   Y   Y+  +PV +LV + A   Q  TQ    RP+GV LL+AG D+ G  LY   PSG+YF ++A A+G     AKT+LE+R+    E   +D I  A++ ++E  +G+   ++I
Sbjct:    4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME--LDDAIHTAILTLKEGYEGQISANNI 208          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.992e-30
Identity = 81/206 (39.32%), Postives = 112/206 (54.37%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            YD  +T +SP GRL+QVEYA EAV++G+ A+G++    VVL    +  S+L   S  +KIF++DDHI  A +GL AD RVL    R E      +Y   + V  L  ++ D  Q  TQ    RP+G+ LL+ G+D   A L+   PSG   EY+A AIGS    A   LE ++ EN   S   +L   AL    E L+ E +  +I
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYDENMIVSEGMELALYALSKTTEELKPENIDMAI 215          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.992e-30
Identity = 80/206 (38.83%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            YD  +T +SP GRL+QVEYA EAV++G+ A+G++ K  VVL    +  S+L   S  +KIF++DDHI  A +GL AD RVL    R E      +Y   + V  L  ++ D  Q  TQ    RP+G+ LL+ G+D   A L+   PSG   EY+A AIGS    A   LE ++ E+ + +   +L   AL    E L+ E +  +I
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTEELKPENIDMAI 215          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 76/200 (38.00%), Postives = 115/200 (57.50%), Query Frame = 3
Query:   69 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD--EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 656
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R    VVL    K+  +L  S   +KI  +D+HI +A AGL AD RVL    R EC ++  T E P+ V  +   +A   Q  TQ    RP+G+  L+ G D   +   LY   PSG +  ++A A G  S + + +LE+   N+ ES  ++ +K A+ A+ E ++
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEK---NYKESAGQETVKLAIRALLEVVE 199          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 74/207 (35.75%), Postives = 120/207 (57.97%), Query Frame = 3
Query:   72 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            YD  +T +SP GRLFQVEYA +AVK  G  +IG+R K  V +    K   +L   +    +F +  ++G+   G+TAD R L +  R+E   + + Y   +PV  L   +ADK+QV TQ ++ RP GV  ++ G+D EKG  L+   P+G++F ++A + GS+ Q A  +LE++ +N    + E+ ++ A+ A++  LQ +   S I
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKWIADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASEI 215          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 75/179 (41.90%), Postives = 109/179 (60.89%), Query Frame = 3
Query:   63 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYL 572
            R++YD  V+T+SP GRLFQVEY++EA+K GS AIG+ +K  VVLG   +A S L  S   +KI ++D HIG A++GLTAD R +  + R+  + ++  Y+  + V  L   + D A          +R   RP+GV LL+AG D + G  L++  PSG ++ Y A AIGS S+ A+  L
Sbjct:    5 RSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAEL 183          
BLAST of FC931659 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.305e-29
Identity = 71/210 (33.81%), Postives = 118/210 (56.19%), Query Frame = 3
Query:   57 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI 680
            M   +Y   +TT+SP+G+L Q+EYA+ AV  G+ ++G+ +   VV+   NK  S L       ++  + +HIG+  +G+  D R+L +  R     Y  TY+ P+PV +LV ++A   Q  TQ    RP+GV LL+ G D    +LY + PSG YF ++A A+G  +   KT+LE+R+    E   +D +  A++ ++E  +G+    +I
Sbjct:    1 MATERYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLE--LDDAVHTAILTLKEGFEGKMTADNI 208          
The following BLAST results are available for this feature:
BLAST of FC931659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA6A_ARATH7.650e-3036.18Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA5_CAEEL7.650e-3037.44Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA2_ORYSJ7.650e-3036.23Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI7.650e-3036.23Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSMA_METM69.992e-3039.32Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM59.992e-3038.83Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSA7A_ARATH1.305e-2938.00Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA6_TOBAC1.305e-2935.75Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA5_YEAST1.305e-2941.90Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSA2_DROME1.305e-2933.81Proteasome subunit alpha type-2 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC34107F02EF PostHarvP1 Citrus clementina cDNA clone C34107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931659 ID=FC931659; Name=FC931659; organism=Citrus clementina; type=EST; length=682bp
GTCCAGCGTTTGTTTCATCGCGAAATTAATACGGCACGAAAGATTAAACC
CTAAAAATGTTTAGGAACCAATACGACACCGACGTGACAACATGGAGCCC
CGCGGGCCGATTATTTCAAGTGGAGTACGCGATGGAGGCCGTCAAGCAAG
GCTCCGCCGCAATTGGGCTCCGATCTAAGACTCACGTGGTCTTGGGCTGC
GTTAACAAGGCCAACTCCGAGCTCTCGTCTCACCAGAAGAAGATCTTCAA
GGTCGACGACCACATCGGCGTCGCTATCGCCGGTCTCACCGCCGACGGCC
GTGTTCTGTCTCGGTACATGCGATCCGAGTGTATTAACTACAGTTACACT
TACGAGTCGCCGCTTCCTGTCGGCCGCCTTGTTGTCCAGCTCGCTGACAA
GGCTCAGGTCTGTACCCAGCGCTCATGGAAACGGCCATATGGTGTTGGCC
TGCTGGTTGCTGGCTTGGATGAAAAAGGAGCCCACCTTTATTATAACTGC
CCAAGTGGGAACTATTTTGAGTATCAAGCATTTGCCATTGGGTCCCGATC
TCAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTTTCAGAAT
CTACAAGAGAAGATCTGATCAAGGACGCTCTCATGGCAATAAGGGAAACC
TTACAAGGAGAAACACTAAAGAGTTCTATTTG
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