FC931662
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39 Identity = 90/229 (39.30%), Postives = 129/229 (56.33%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISRY 722 MG+ + +Q +GRG+ + + + K ++R+ D E G G V +I+HD GR AP+AKV+F + + + EG+ G+ I G +A + GN+LPL +PEG + N+E GD G L R+ G Y V+ H+ GKT VKLPSG KV+ R VG+VAGGGR +KP +KAG+ H + K +WPK RGVAMN VD S++SR+ Sbjct: 1 MGKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFANDEE-----RLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHDV--GKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRH 222
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39 Identity = 88/206 (42.72%), Postives = 126/206 (61.17%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMN 653 MG+ I QR+G+ S +F ++ APA++ LD ++ + + VV++++HD GR PLA+V+ F + A EGMY GQ I G A GNILP+ +PEG + N+E++ GD G R SG Y ++G GKT+V+LPSG + N +R M+G++AGGGR +KPLLKAG A +K++ K WPK RGVAMN Sbjct: 1 MGKRIIPQRRGKASPVFKTPDHIHVAPARYPLLDPSKTY---KAVVEDLVHDPGRWVPLAQVKLETGLVFYVP-----AVEGMYAGQIIEIGPGAKPVNGNILPVGMIPEGMQVVNIEKRPGDGGKFVRASGTYAVIVGR--AGGKTQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMN 196
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38 Identity = 87/228 (38.16%), Postives = 127/228 (55.70%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719 MG+ + +QR+GRGS ++T + + A++R D E G G + +I+HD GR AP+AKV++ + ++ EG+ G I G +A + GNILPL ++PEG + N+E GD G L R G Y ++ H+ E +T VKLPSG K + + R +G+VAGGGR +KP +KAG+ H K WP+ RGVAMN VD +T+SR Sbjct: 1 MGKRLISQRRGRGSSVYTCPSHKRRGEAKYRRFDELEKKGKVLGKIVDILHDPGRSAPVAKVEYETGEEGLLVVP-----EGVKVGDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTHDGE--RTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSR 221
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38 Identity = 87/209 (41.63%), Postives = 124/209 (59.33%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVD 662 MG+ + QR+G+GS F + + + ++ L++ + RGVV+EI+HD GR AP+A+V+F + I + IA EG+ GQ IY G +A + VGN LPLA +PEGT + N+E GD G R G Y V+ P+ K V+LPSG K R +G+VAGGGR +KPL+KAG+A +K+ + WP RGV MN V+ Sbjct: 1 MGKSLIQQRRGKGSPTFKSPSHRFRGAVKYIPLNYTQEKTL-RGVVEEIMHDPGRTAPVARVKFENG-----IEKLIIAPEGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPD--KVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVN 201
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38 Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719 MG+ + +Q +GRG+ + + + K ++R+ D E G G V +++HD GR AP+AKV+F + + + EG+ G+ I G +A + GN+LPL +PEG + N+E GD G L R G Y V+ H + GKT VKLPSG KV+ R +G+VAGGGR +KP +KAG+ H + K +WPK RGVAMN VD S++SR Sbjct: 1 MGKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANGEE-----RLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSR 221
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38 Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719 MG+ + +Q +GRG+ + + + K ++R+ D E G G V +++HD GR AP+AKV+F + + + EG+ G+ I G +A + GN+LPL +PEG + N+E GD G L R G Y V+ H + GKT VKLPSG KV+ R +G+VAGGGR +KP +KAG+ H + K +WPK RGVAMN VD S++SR Sbjct: 1 MGKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANGEE-----RLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSR 221
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.206e-37 Identity = 92/228 (40.35%), Postives = 130/228 (57.02%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719 MG+ + QR+G+GS ++ + L+ APA++ L RG V E++HD GR PLA + + +F + A EGMY GQ I G +A GNILP+ +PEGT + N+E + GD G L R G Y ++G + KT ++LPSG K + N AR +GIVAG GR +KPLLKAG A +K++ K + WP+ RGVAMN V+ +T+SR Sbjct: 1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLTPVTL----RGRVVELVHDPGRWVPLAHIVLENGDEFYIP-----AAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSR 217
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 9.370e-37 Identity = 85/209 (40.67%), Postives = 123/209 (58.85%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVD 662 MG+ + QR+G+GS F + + + ++ L++ + RGVV+EI+HD GR AP+A+V+F + + + IA EG+ GQ IY G +A + +GN LPLA +PEGT + N+E GD G R G Y V+ E K V+LPSG K R +G+VAGGGR +KPL+KAG+A +K+ + WP RGV MN V+ Sbjct: 1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTL-RGVVEEIMHDPGRTAPVARVRFENGME-----KLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVN 201
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.224e-36 Identity = 86/209 (41.15%), Postives = 123/209 (58.85%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVD 662 MG+ + QR+G+GS F + + + ++ L++ + RGVV+EI+HD GR AP+A+V+F + + + IA EG+ GQ IY G +A + +GN LPLA +PEGT I N+E GD G R G Y V+ E K V+LPSG K R +G+VAGGGR +KPL+KAG+A +K+ + WP RGV MN V+ Sbjct: 1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTI-RGVVEEIMHDPGRTAPVARVKFENGME-----KLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVN 201
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36 Identity = 86/207 (41.55%), Postives = 117/207 (56.52%), Query Frame = 3 Query: 39 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNP 656 MG+ I QR+GRG S F + + P ++ L GY V +I+H+ G AP+AK+ + +F A EG+Y GQ + GK A+ GNI+ L +PEGT+I NVE++AGD G R G Y VIG PE+ KT ++LPSG + + R VGIVAGGGR +KP LKAG+ H+ K +P RG AM+P Sbjct: 1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLGVISGKGY----VVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSP 198 The following BLAST results are available for this feature:
BLAST of FC931662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931662 ID=FC931662; Name=FC931662; organism=Citrus clementina; type=EST; length=723bpback to top |