FC931662

Overview
NameFC931662
Unique NameFC931662
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15529 contig Ccv1_Contig15529:6..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 90/229 (39.30%), Postives = 129/229 (56.33%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISRY 722
            MG+ + +Q +GRG+  + + +   K   ++R+ D  E  G   G V +I+HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R+ G Y  V+ H+   GKT VKLPSG  KV+    R  VG+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VD              S++SR+
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFANDEE-----RLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSHDV--GKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRH 222          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.869e-39
Identity = 88/206 (42.72%), Postives = 126/206 (61.17%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMN 653
            MG+ I  QR+G+ S +F     ++ APA++  LD ++ +   + VV++++HD GR  PLA+V+      F +      A EGMY GQ I  G  A    GNILP+  +PEG  + N+E++ GD G   R SG Y  ++G     GKT+V+LPSG    + N +R M+G++AGGGR +KPLLKAG A +K++ K   WPK RGVAMN
Sbjct:    1 MGKRIIPQRRGKASPVFKTPDHIHVAPARYPLLDPSKTY---KAVVEDLVHDPGRWVPLAQVKLETGLVFYVP-----AVEGMYAGQIIEIGPGAKPVNGNILPVGMIPEGMQVVNIEKRPGDGGKFVRASGTYAVIVGR--AGGKTQVQLPSGRVIEVPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMN 196          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_METJA (50S ribosomal protein L2P OS=Methanocaldococcus jannaschii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 87/228 (38.16%), Postives = 127/228 (55.70%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MG+ + +QR+GRGS ++T  +   +  A++R  D  E  G   G + +I+HD GR AP+AKV++    +  ++       EG+  G  I  G +A +  GNILPL ++PEG  + N+E   GD G L R  G Y  ++ H+ E  +T VKLPSG  K + +  R  +G+VAGGGR +KP +KAG+  H    K   WP+ RGVAMN VD              +T+SR
Sbjct:    1 MGKRLISQRRGRGSSVYTCPSHKRRGEAKYRRFDELEKKGKVLGKIVDILHDPGRSAPVAKVEYETGEEGLLVVP-----EGVKVGDIIECGVSAEIKPGNILPLGAIPEGIPVFNIETVPGDGGKLVRAGGCYAHILTHDGE--RTYVKLPSGHIKALHSMCRATIGVVAGGGRKEKPFVKAGKKYHAMKAKAVKWPRVRGVAMNAVDHPFGGGRHQHTGKPTTVSR 221          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38
Identity = 87/209 (41.63%), Postives = 124/209 (59.33%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVD 662
            MG+ +  QR+G+GS  F + +   +   ++  L++ +     RGVV+EI+HD GR AP+A+V+F +      I +  IA EG+  GQ IY G +A + VGN LPLA +PEGT + N+E   GD G   R  G Y  V+   P+  K  V+LPSG  K      R  +G+VAGGGR +KPL+KAG+A +K+  +   WP  RGV MN V+
Sbjct:    1 MGKSLIQQRRGKGSPTFKSPSHRFRGAVKYIPLNYTQEKTL-RGVVEEIMHDPGRTAPVARVKFENG-----IEKLIIAPEGLLVGQEIYIGPDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPD--KVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVN 201          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_METVS (50S ribosomal protein L2P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38
Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MG+ + +Q +GRG+  + + +   K   ++R+ D  E  G   G V +++HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R  G Y  V+ H  + GKT VKLPSG  KV+    R  +G+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VD              S++SR
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANGEE-----RLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSR 221          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_METVA (50S ribosomal protein L2P OS=Methanococcus vannielii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38
Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MG+ + +Q +GRG+  + + +   K   ++R+ D  E  G   G V +++HD GR AP+AKV+F +  +        +  EG+  G+ I  G +A +  GN+LPL  +PEG  + N+E   GD G L R  G Y  V+ H  + GKT VKLPSG  KV+    R  +G+VAGGGR +KP +KAG+  H  + K  +WPK RGVAMN VD              S++SR
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGEVKYRSYDEMEKVGKVLGTVIDVLHDPGRSAPVAKVRFANGEE-----RLVLIPEGISVGEQIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRAGGCYAHVVAH--DIGKTIVKLPSGYAKVLNPACRATIGVVAGGGRKEKPFVKAGKKHHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSR 221          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_HYPBU (50S ribosomal protein L2P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.206e-37
Identity = 92/228 (40.35%), Postives = 130/228 (57.02%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVDXXXXXXXXXXXXXXSTISR 719
            MG+ +  QR+G+GS ++ +   L+ APA++  L         RG V E++HD GR  PLA +   +  +F +      A EGMY GQ I  G +A    GNILP+  +PEGT + N+E + GD G L R  G Y  ++G +    KT ++LPSG  K + N AR  +GIVAG GR +KPLLKAG A +K++ K + WP+ RGVAMN V+              +T+SR
Sbjct:    1 MGKRLIVQRRGKGSPLYRSRPWLHPAPARYPPLTPVTL----RGRVVELVHDPGRWVPLAHIVLENGDEFYIP-----AAEGMYVGQIIEIGPDARPVNGNILPVGKIPEGTQVYNIEIRPGDGGKLVRAYGTYAIILGRS--GNKTIIQLPSGKVKEVPNDARATIGIVAGAGRLEKPLLKAGAAYYKWSAKPHVWPRVRGVAMNAVNHPHGGGSHQSPSFPTTVSR 217          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.370e-37
Identity = 85/209 (40.67%), Postives = 123/209 (58.85%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVD 662
            MG+ +  QR+G+GS  F + +   +   ++  L++ +     RGVV+EI+HD GR AP+A+V+F +  +     +  IA EG+  GQ IY G +A + +GN LPLA +PEGT + N+E   GD G   R  G Y  V+    E  K  V+LPSG  K      R  +G+VAGGGR +KPL+KAG+A +K+  +   WP  RGV MN V+
Sbjct:    1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTL-RGVVEEIMHDPGRTAPVARVRFENGME-----KLIIAPEGLLVGQEIYIGPDAPIAIGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFNPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVN 201          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.224e-36
Identity = 86/209 (41.15%), Postives = 123/209 (58.85%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPVD 662
            MG+ +  QR+G+GS  F + +   +   ++  L++ +     RGVV+EI+HD GR AP+A+V+F +  +     +  IA EG+  GQ IY G +A + +GN LPLA +PEGT I N+E   GD G   R  G Y  V+    E  K  V+LPSG  K      R  +G+VAGGGR +KPL+KAG+A +K+  +   WP  RGV MN V+
Sbjct:    1 MGKSLIQQRRGKGSPTFRSPSHRFRGAVKYIPLNYTQDKTI-RGVVEEIMHDPGRTAPVARVKFENGME-----KLIIAPEGLLVGQEIYIGPDAPVEIGNTLPLAKIPEGTYIYNIEGVPGDGGKYVRAGGTYALVVSR--EKDKVIVQLPSGELKAFDPNCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVN 201          
BLAST of FC931662 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.650e-36
Identity = 86/207 (41.55%), Postives = 117/207 (56.52%), Query Frame = 3
Query:   39 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNP 656
            MG+ I  QR+GRG S F + +     P ++  L      GY    V +I+H+ G  AP+AK+   +  +F        A EG+Y GQ +  GK A+   GNI+ L  +PEGT+I NVE++AGD G   R  G Y  VIG  PE+ KT ++LPSG    + +  R  VGIVAGGGR +KP LKAG+  H+   K   +P  RG AM+P
Sbjct:    1 MGKRILVQRRGRGGSQFRSPSWKRDGPVRYPPLGVISGKGY----VVDILHEPGLNAPVAKIVTENGVEFFNY-----AAEGLYVGQVVEIGKGASPKTGNIMILGEIPEGTMIFNVEKRAGDGGKFARAGGTYAVVIGQKPEENKTIIRLPSGRTVEVDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSP 198          
The following BLAST results are available for this feature:
BLAST of FC931662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METM65.869e-3939.3050S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_DESK15.869e-3942.7250S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_METJA2.913e-3838.1650S ribosomal protein L2P OS=Methanocaldococcus ja... [more]
RL2_PYRFU6.489e-3841.6350S ribosomal protein L2P OS=Pyrococcus furiosus G... [more]
RL2_METVS8.475e-3838.6050S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_METVA8.475e-3838.6050S ribosomal protein L2P OS=Methanococcus vanniel... [more]
RL2_HYPBU4.206e-3740.3550S ribosomal protein L2P OS=Hyperthermus butylicu... [more]
RL2_PYRAB9.370e-3740.6750S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_PYRHO1.224e-3641.1550S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]
RL2_PYRAE4.650e-3641.5550S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionC34107F05EF PostHarvP1 Citrus clementina cDNA clone C34107F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931662 ID=FC931662; Name=FC931662; organism=Citrus clementina; type=EST; length=723bp
GGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTCGTGTC
ATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAACACCCG
CCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGAGGCTC
ACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCGGCCGT
GGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTCAAGAT
GATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCAGTTCA
TCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTCCTCTC
GCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAGGCTGG
TGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGTTATTG
GCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCGGTGCC
AAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTTGCCGG
TGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAAGCACA
AGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTGCCATG
AACCCCGTCGATCACCCTCACGGTGGTGGTAACCACCAGCACATCGGGTA
GGGCTCGACCATCTCCCGCTACG
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