FC931663

Overview
NameFC931663
Unique NameFC931663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: CYSN_VIBPA (Sulfate adenylyltransferase subunit 1 OS=Vibrio parahaemolyticus GN=cysN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 50/169 (29.59%), Postives = 86/169 (50.89%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG 510
            LG+K  +   NKMD     YS+AR++EI  E   + + +  + + +  +PIS  EGDN++++  NL+W++GP+LL+ L+ ++          R P+Q V +         G V +G +K G  +   PSG T+ V  +      ++EA  G  V   + +    D+ RG
Sbjct:  157 LGLKHFVVAINKMDLVD--YSQARFEEIRDEYLKFSENLTGDID-IQIIPISALEGDNVVDKGQNLNWFEGPSLLELLETVDVDYEKGAGEFRFPVQYVNRPNLDFRGFAGTVSSGSVKVGDAIKALPSGKTSTVARIVTFDGDIEEAQAGLAVTLTLNDEI--DISRG 320          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: CYSN_SHIBS (Sulfate adenylyltransferase subunit 1 OS=Shigella boydii serotype 4 (strain Sb227) GN=cysN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 48/159 (30.19%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNV 465
            LG+K ++   NKMD     YS+  +  I ++  ++  ++  N + + FVP+S  EGDN+  +S ++ WY GPTLL+ L+ +   +    +P+R P+Q V +      G  GT+  GRVE G     +     PSG+ + V  +       +EA  G+ +
Sbjct:  158 LGIKHLVVAINKMDLVD--YSEETFTHIREDYLTFAGQLPGNLD-IRFVPLSALEGDNVASQSESMSWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKAL-----PSGVESNVARIVTFDGDREEAFAGEAI 308          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: CYSN_SHIB3 (Sulfate adenylyltransferase subunit 1 OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=cysN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 49/159 (30.82%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNV 465
            LG+K ++   NKMD     YS+  +  I ++  ++  ++  N + + FVP+S  EGDN+  +S ++ WY GPTLL+ L+ +   +    +P+R P+Q V +      G  GT+  GRVE      G  V   PSG+ + V  +       +EA  G+ +
Sbjct:  158 LGIKHLVVAINKMDLVD--YSEETFTRIREDYLTFAGQLPGNLD-IRFVPLSALEGDNVASQSESMSWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEV-----GQRVKVLPSGVESNVARIVTFDGDREEAFAGEAI 308          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: CYSN_LARHH (Sulfate adenylyltransferase subunit 1 OS=Laribacter hongkongensis (strain HLHK9) GN=cysN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 56/204 (27.45%), Postives = 99/204 (48.53%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNH-PGQIGNGY 612
            LG++ +I   NKMD    ++ +A ++ I ++  ++ K +  +   + FVP+S   GDN++  S  + WY GP+L+  LD+I      + +  RLP+Q V +         G +  GV++PG  VT  PSG  + V+++      L  A  G  V   +++    D+ RG +     +     A   T +++ M+  P Q G  Y
Sbjct:  155 LGIRHVIVAVNKMDLL--EFDQAVFERIRQDYLTFAKALDIHD--IRFVPLSALRGDNVVSPSERMPWYDGPSLMQLLDSIRLDADQALQAFRLPVQYVNRPNLDFRGFCGTIAAGVIRPGDQVTVLPSGRQSRVRAIVTTDGELPVAATGQAVTLTLEDEI--DISRGDMIVRHGEPLPLVADRLTVELVWMHDAPLQTGRAY 352          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: CYSNC_XYLFT (Bifunctional enzyme cysN/cysC OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=cysNC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 61/199 (30.65%), Postives = 97/199 (48.74%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQ-----DVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 585
            LG++ ++   NKMD     Y +  ++ I  +  +   K+G N  +V  +P+S  EGDN+ +RS  + WY GP+LL+ L+ +          + LP+Q     D    G  GT+  GRV +G    G+VV   PSG  + V  V      + EA+ G  V   + +    D+ RG V + + DDP   A   T+ V+ M+
Sbjct:  147 LGIRHVVLAVNKMDLVG--YDQQTFEAIASDYLALAAKLGIN--QVQCIPLSALEGDNLCKRSARMLWYVGPSLLEYLEALEPADVDLAAAMCLPVQWVNRPDSQFRGFTGTLAAGRVRSG---DGVVVL--PSGCVSRVVRVFNGDTEVHEAVAGQAVTLTLADEI--DISRGDVIA-ATDDPPEVADQVTAYVLWMD 333          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STIHE (Elongation factor Tu, chloroplastic OS=Stigeoclonium helveticum GN=tufA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 62/183 (33.88%), Postives = 90/183 (49.18%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D    +       E+V+ EV   L K G+  ++V  +  S       +  + N+     +W  K   L+  +D +I  PKR  DKP  L ++DV+ I G GTV  GRVE G LK    V     GL    TT V ++EM  + L E + GDNVG  ++ V  KD++RG V
Sbjct:  126 VGVPAIVVFLNKAD----QVDDPELLELVELEVRDILDKYGFASDEVQILSGSALLALEALVENPNIKPGDSEWVDKIYNLMATVDEHIPTPKREMDKPFLLAVEDVFSITGRGTVATGRVERGTLKVNETVEI--IGLRDTKTTTVTAIEMFQKTLDETIAGDNVGILLRGVQKKDIERGMV 302          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_PELUB (Elongation factor Tu OS=Pelagibacter ubique GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 59/180 (32.78%), Postives = 93/180 (51.67%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEG-DNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +G+  ++   NK+D    K      +E ++E+ +  K   Y  +K P V    ++  EG D  I +++ ++      L+ A+D  I +P R  DKP  +P++DV+ I G GTV  GR+E+GV+K G  V     G+T   KS    VEM  + L     GDNVG  ++ V   D++RG V
Sbjct:  126 VGIPAIVVYLNKVDQVDDKDMIELVEEEIRELLTSYK---YPGDKTPIVKGSALAAVEGRDEEIGKNSIIE------LMKAVDEFIPQPTRDIDKPFLMPVEDVFSISGRGTVATGRIESGVIKTGEEVEI--VGVTATKKSVCTGVEMFRKLLDSGEAGDNVGILLRGVERDDIQRGQV 294          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_LACRJ (Elongation factor Tu OS=Lactobacillus reuteri (strain JCM 1112) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 65/227 (28.63%), Postives = 103/227 (45.37%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM------NHPGQIGNGYAPVLDCHTSHI 645
            +GV+ ++   NK D           D +  EV   L +  +  + VP V    +   EGD   E+           L+D +D+ I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      L + V  +EM H+ L     GDNVG  ++ ++   ++RG V   ++    +   NF  +V +M       H     N Y P    HT+ +
Sbjct:  127 VGVQYIVVFLNKTDLVD---DDELVDLVEMEVRDLLSEYDFPGDDVPVVRGSALKALEGDPEQEKVIL-------HLMDVIDDYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKVGDEVEIVGLTEDVLKSTVTGLEMFHKTLDLGEAGDNVGVLLRGISHDQIQRGQVL--AEPGSIQTHKNFKGEVYVMTKEEGGRHTPFFSN-YRPQFYFHTTDV 340          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_LACRD (Elongation factor Tu OS=Lactobacillus reuteri (strain DSM 20016) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 65/227 (28.63%), Postives = 103/227 (45.37%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM------NHPGQIGNGYAPVLDCHTSHI 645
            +GV+ ++   NK D           D +  EV   L +  +  + VP V    +   EGD   E+           L+D +D+ I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      L + V  +EM H+ L     GDNVG  ++ ++   ++RG V   ++    +   NF  +V +M       H     N Y P    HT+ +
Sbjct:  127 VGVQYIVVFLNKTDLVD---DDELVDLVEMEVRDLLSEYDFPGDDVPVVRGSALKALEGDPEQEKVIL-------HLMDVIDDYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKVGDEVEIVGLTEDVLKSTVTGLEMFHKTLDLGEAGDNVGVLLRGISHDQIQRGQVL--AEPGSIQTHKNFKGEVYVMTKEEGGRHTPFFSN-YRPQFYFHTTDV 340          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_DESVM (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 59/199 (29.65%), Postives = 97/199 (48.74%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 585
            +GV  ++   NK D       +   + +  EV   L   G+  + +P +  S  +     +   + D      LLDA D+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G++K G  V     G+   VKS    VEM  + L +   GDN+G  ++ +  +D++RG V +  K    +    F ++V +++
Sbjct:  126 VGVPYLVVFLNKCDMVD---DEELLELVELEVRELLSLYGFPGDDIPVIRGSALKALET-DDPNSADAAPVVALLDACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEI--VGIKDTVKSTCTGVEMFRKLLDQGQAGDNIGALLRGIKREDVERGQVLAAPKS--IKPHRKFKAEVYVLS 316          
The following BLAST results are available for this feature:
BLAST of FC931663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYSN_VIBPA7.890e-1429.59Sulfate adenylyltransferase subunit 1 OS=Vibrio pa... [more]
CYSN_SHIBS7.890e-1430.19Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_SHIB37.890e-1430.82Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]
CYSN_LARHH7.890e-1427.45Sulfate adenylyltransferase subunit 1 OS=Laribacte... [more]
CYSNC_XYLFT7.890e-1430.65Bifunctional enzyme cysN/cysC OS=Xylella fastidios... [more]
EFTU_STIHE1.030e-1333.88Elongation factor Tu, chloroplastic OS=Stigeocloni... [more]
EFTU_PELUB1.030e-1332.78Elongation factor Tu OS=Pelagibacter ubique GN=tuf... [more]
EFTU_LACRJ1.030e-1328.63Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_LACRD1.030e-1328.63Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_DESVM1.030e-1329.65Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]

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Properties
Property NameValue
Genbank descriptionC34107F06EF PostHarvP1 Citrus clementina cDNA clone C34107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931663 ID=FC931663; Name=FC931663; organism=Citrus clementina; type=EST; length=689bp
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGG
TGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAA
CTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTT
CCGGGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCT
CAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGAGAAG
CTGCCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATT
GGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGT
CAAGTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATC
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