FC931663

Overview
NameFC931663
Unique NameFC931663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBP (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 53/177 (29.94%), Postives = 87/177 (49.15%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D           + + +E+   L K  +  +K PF+    +   EG++     ++L       L++A+D  +  P R  DKP  +P++DV+ I G GTV  GRVE GVLK    +       TT+  V  +EM  + L +A  GDN+G  ++    +D++RG V
Sbjct:  128 VGVPYIVVYLNKADMLAADERDDMVEMVKEEIKDLLNKYNFPGDKTPFISGSALKALEGED-----SDLGMKSILKLMEAVDTYVPNPTRIVDKPFLMPVEDVFSITGRGTVATGRVEQGVLKINDEIEIVGIRDTTKSVVTGIEMFRKLLDQAEAGDNIGALLRGTKKEDIERGQV 299          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBA (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 53/177 (29.94%), Postives = 87/177 (49.15%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D           + + +E+   L K  +  +K PF+    +   EG++     ++L       L++A+D  +  P R  DKP  +P++DV+ I G GTV  GRVE GVLK    +       TT+  V  +EM  + L +A  GDN+G  ++    +D++RG V
Sbjct:  128 VGVPYIVVYLNKADMLAADERDDMVEMVKEEIKDLLNKYNFPGDKTPFISGSALKALEGED-----SDLGMKSILKLMEAVDTYVPNPTRIVDKPFLMPVEDVFSITGRGTVATGRVEQGVLKINDEIEIVGIRDTTKSVVTGIEMFRKLLDQAEAGDNIGALLRGTKKEDIERGQV 299          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG------DNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D       +   + +  EV   L +  +  + +PFV  S          +N I+R  N +W  K  +L+DA+D  I  P R  +K   + ++DV+ I G GTV  GR+E G++K G  +     GL    TT +  +EM  + L E + GDN+G  ++ V  KD++RG V
Sbjct:  126 VGVPNVVVFLNKQDQVD---DEELLELVELEVRELLIQYDFPGDDIPFVAGSALLALEKVTENNSIQRGEN-EWVDKIHSLMDAVDEYIPTPVRDVEKTFLMAVEDVFSITGRGTVATGRIERGIIKVGDTIEI--VGLRETTTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERGMV 302          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_ERYLH (Elongation factor Tu OS=Erythrobacter litoralis (strain HTCC2594) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 59/200 (29.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG-MVVTFGPSGLT-TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 585
            +GV  ++   NK+D       +   + +  EV   L +  ++ + +P V    ++  EG     R  N+       L+ A+D +I +P+RP D+   +P++DV+ I G GTV  GRVETGV+  G  V   G    T T V  VEM  + L     GDN+G  ++ V  +D++RG V   +K         F+++V +++
Sbjct:  126 VGVPALVVYLNKVDQVD---DEELLELVELEVRELLSEYDFDGDNIPIVKGSALAALEG-----RDDNIGKESIVELMKAVDEHIPQPERPVDQDFLMPIEDVFSISGRGTVVTGRVETGVVNVGDEVEIVGIKDTTKTTVTGVEMFRKLLDRGEAGDNIGALIRGVGREDVERGQVL--AKPGSVTPHTEFSAEVYVLS 315          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCR (Elongation factor Tu OS=Ehrlichia chaffeensis (strain Arkansas) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY--KGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVAS 522
            +GVK ++   NK D    +   +  +  ++E+   L K GY  + +  V  S  +    +E  T    +  K   L++AL+ I+ P R  DKP  + ++DV+ I G GTV  GR+E GV++ G  +     GL    +T    VEM H+AL     GDN G  ++ +  +D++RG V S
Sbjct:  125 VGVKDIVVWMNKCDVVDDEEMLSLVEMEIREL---LSKYGYPGDDIDVVRGSAVKA---LEEETGSGVWSEKIMELMNALEKISLPTREKDKPFLMSIEDVFSIPGRGTVVTGRIERGVIRVGDKIEI--VGLRDIQSTVCTGVEMFHKALDAGEAGDNAGILLRGIKKEDVERGQVLS 295          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_CHLFF (Elongation factor Tu OS=Chlamydophila felis (strain Fe/C-56) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 58/178 (32.58%), Postives = 92/178 (51.69%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-NMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D  + + ++   D +  E+S  L++ GY  +  P +    +   EGD + +E+   L        + A+D NI  P+R  DKP  +P++DV+ I G GTV  GR+E GV+K G  V       T E  V  VEM  + L E   G+NVG  ++ +   D++RG V
Sbjct:  126 VGVPYIVVFLNKIDMISQEDAEL-VDLVEMELSELLEEKGY--KGCPIIRGSALKALEGDASYVEKIREL--------MQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGVVKVGDKVQIVGLRDTRESIVTGVEMFRKELPEGQAGENVGLLLRGIGKNDVERGMV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_CHLAB (Elongation factor Tu OS=Chlamydophila abortus GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 58/178 (32.58%), Postives = 92/178 (51.69%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-NMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D  + + ++   D +  E+S  L++ GY  +  P +    +   EGD + +E+   L        + A+D NI  P+R  DKP  +P++DV+ I G GTV  GR+E GV+K G  V       T E  V  VEM  + L E   G+NVG  ++ +   D++RG V
Sbjct:  126 VGVPYIVVFLNKIDMISQEDAEL-VDLVEMELSELLEEKGY--KGCPIIRGSALKALEGDASYVEKIREL--------MQAVDDNIPTPEREVDKPFLMPIEDVFSISGRGTVVTGRIERGVVKVGDKVQIVGLRDTRETIVTGVEMFRKELPEGQAGENVGLLLRGIGKNDVERGMV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_ARTS2 (Elongation factor Tu OS=Arthrobacter sp. (strain FB24) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 58/179 (32.40%), Postives = 87/179 (48.60%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF---EGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D       +   D +  EV   L   G++ ++ P V +SG    EGD         +W K    L+ A+D ++ +P R  DKP  +P++DV+ I G GTV  GR E G L       +V   P   TT V  +EM H+ L EA  G+N G  ++ +   D++RG V
Sbjct:  128 VGVPYLLVALNKADMVD---DEELLDLVEMEVRELLSSQGFDGDEAPVVRVSGLKALEGDP--------EWVKSVEDLMAAVDESVPDPVRDRDKPFLMPIEDVFTITGRGTVVTGRAERGTLAINSEVEIVGIRPVQKTT-VTGIEMFHKQLDEAWAGENCGLLLRGLKRDDVERGQV 294          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_ANASP (Elongation factor Tu OS=Anabaena sp. (strain PCC 7120) GN=tuf PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 55/181 (30.39%), Postives = 93/181 (51.38%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP------TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV +++   NK D        A   E+V+ E+   L +  ++ + +P V  SG +   ++ ++      + P       L+DA+D+ I +P+R  DKP  + ++DV+ I G GTV  GR+E G +K G VV       T  T V  +EM  ++L E + GDN G  ++ +   D++RG V
Sbjct:  126 VGVPKLVVFLNKEDMM----EDAELLELVELELRELLTEYEFDGDDIPIVRGSGLQALEVMTKNPKTQRGENPWVDKIYELMDAVDSYIPDPERDIDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGDVVELVGIRDTRNTTVTGIEMFKKSLDEGMAGDNAGVLLRGIQKADIERGMV 302          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: CYSN_SHIDS (Sulfate adenylyltransferase subunit 1 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cysN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.346e-13
Identity = 49/159 (30.82%), Postives = 82/159 (51.57%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNV 465
            LG+K ++   NKMD     YS+  +  I ++  ++  ++  N + + FVP+S  EGDN+  +S ++ WY GPTLL+ L+ +   +    +P+R P+Q V +      G  GT+  GRVE      G  V   PSG+ + V  +       +EA  G+ +
Sbjct:  158 LGIKHLVVAINKMDLMD--YSEETFTRIREDYLTFAGQLPGNLD-IRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEV-----GQRVKVLPSGVESNVARIVTFDGDREEAFAGEAI 308          
The following BLAST results are available for this feature:
BLAST of FC931663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LEPBP1.346e-1329.94Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_LEPBA1.346e-1329.94Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_GRATL1.346e-1331.15Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_ERYLH1.346e-1329.50Elongation factor Tu OS=Erythrobacter litoralis (s... [more]
EFTU_EHRCR1.346e-1331.28Elongation factor Tu OS=Ehrlichia chaffeensis (str... [more]
EFTU_CHLFF1.346e-1332.58Elongation factor Tu OS=Chlamydophila felis (strai... [more]
EFTU_CHLAB1.346e-1332.58Elongation factor Tu OS=Chlamydophila abortus GN=t... [more]
EFTU_ARTS21.346e-1332.40Elongation factor Tu OS=Arthrobacter sp. (strain F... [more]
EFTU_ANASP1.346e-1330.39Elongation factor Tu OS=Anabaena sp. (strain PCC 7... [more]
CYSN_SHIDS1.346e-1330.82Sulfate adenylyltransferase subunit 1 OS=Shigella ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107F06EF PostHarvP1 Citrus clementina cDNA clone C34107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931663 ID=FC931663; Name=FC931663; organism=Citrus clementina; type=EST; length=689bp
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGG
TGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAA
CTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTT
CCGGGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCT
CAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGAGAAG
CTGCCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATT
GGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGT
CAAGTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATC
back to top