FC931663

Overview
NameFC931663
Unique NameFC931663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAWA (Elongation factor Tu (Fragment) OS=Staphylococcus warneri GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E        K   L+ A+D+ I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GL     T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:   25 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDEKYEE-------KILELMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEI--IGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 191          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAES (Elongation factor Tu OS=Staphylococcus epidermidis (strain ATCC 12228) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/177 (33.90%), Postives = 89/177 (50.28%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E+   LD      L+ A+D+ I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V       T  T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAEYEQKI-LD------LMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEIIGMHETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAEQ (Elongation factor Tu OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/177 (33.90%), Postives = 89/177 (50.28%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E+   LD      L+ A+D+ I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V       T  T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAEYEQKI-LD------LMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEIIGMHETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAAW (Elongation factor Tu OS=Staphylococcus aureus (strain MW2) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E        K   L++A+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GL     T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAQYEE-------KILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEI--IGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAAT (Elongation factor Tu OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E        K   L++A+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GL     T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAQYEE-------KILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEI--IGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAAS (Elongation factor Tu OS=Staphylococcus aureus (strain MSSA476) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E        K   L++A+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GL     T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAQYEE-------KILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEI--IGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAAR (Elongation factor Tu OS=Staphylococcus aureus (strain MRSA252) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E        K   L++A+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GL     T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAQYEE-------KILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEI--IGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAAN (Elongation factor Tu OS=Staphylococcus aureus (strain N315) GN=tuf PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E        K   L++A+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GL     T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAQYEE-------KILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEI--IGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAAM (Elongation factor Tu OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=tuf PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E        K   L++A+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GL     T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAQYEE-------KILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEI--IGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_STAAE (Elongation factor Tu OS=Staphylococcus aureus (strain Newman) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/179 (33.52%), Postives = 88/179 (49.16%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D       +   + +  EV   L +  +  + VP +    +   EGD   E        K   L++A+D  I  P+R SDKP  +P++DV+ I G GTV  GRVE G +K G  V     GL     T V  VEM  + L  A  GDN+G  ++ VA +D++RG V
Sbjct:  126 VGVPALVVFLNKVDMVD---DEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALEGDAQYEE-------KILELMEAVDTYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVGEEVEI--IGLHDTSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQV 292          
The following BLAST results are available for this feature:
BLAST of FC931663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STAWA1.758e-1333.52Elongation factor Tu (Fragment) OS=Staphylococcus ... [more]
EFTU_STAES1.758e-1333.90Elongation factor Tu OS=Staphylococcus epidermidis... [more]
EFTU_STAEQ1.758e-1333.90Elongation factor Tu OS=Staphylococcus epidermidis... [more]
EFTU_STAAW1.758e-1333.52Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAT1.758e-1333.52Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAS1.758e-1333.52Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAR1.758e-1333.52Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAN1.758e-1333.52Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAM1.758e-1333.52Elongation factor Tu OS=Staphylococcus aureus (str... [more]
EFTU_STAAE1.758e-1333.52Elongation factor Tu OS=Staphylococcus aureus (str... [more]

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Properties
Property NameValue
Genbank descriptionC34107F06EF PostHarvP1 Citrus clementina cDNA clone C34107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931663 ID=FC931663; Name=FC931663; organism=Citrus clementina; type=EST; length=689bp
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGG
TGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAA
CTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTT
CCGGGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCT
CAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGAGAAG
CTGCCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATT
GGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGT
CAAGTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATC
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