FC931663

Overview
NameFC931663
Unique NameFC931663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_MYCTA (Elongation factor Tu OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 64/201 (31.84%), Postives = 95/201 (47.26%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 585
            +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   PS   T V  VEM  + L +   GDNVG  ++ V  +D++RG V   +K         F  QV I++
Sbjct:  128 VGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILS 315          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBT (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 64/201 (31.84%), Postives = 95/201 (47.26%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 585
            +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   PS   T V  VEM  + L +   GDNVG  ++ V  +D++RG V   +K         F  QV I++
Sbjct:  128 VGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILS 315          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBP (Elongation factor Tu OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 64/201 (31.84%), Postives = 95/201 (47.26%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 585
            +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   PS   T V  VEM  + L +   GDNVG  ++ V  +D++RG V   +K         F  QV I++
Sbjct:  128 VGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILS 315          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_MYCBO (Elongation factor Tu OS=Mycobacterium bovis GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 64/201 (31.84%), Postives = 95/201 (47.26%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 585
            +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD     S          L++A+D +I +P R +DKP  +P++DV+ I G GTV  GRVE GV+       +V   PS   T V  VEM  + L +   GDNVG  ++ V  +D++RG V   +K         F  QV I++
Sbjct:  128 VGVPYILVALNKADAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGDAKWVASVE-------ELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVV--TKPGTTTPHTEFEGQVYILS 315          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_LEUCK (Elongation factor Tu OS=Leuconostoc citreum (strain KM20) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/207 (28.99%), Postives = 100/207 (48.31%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGD----NMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVK-----SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN 585
            +GV+ ++   NK D       +   + +  EV   L +  +  + +P +    +   EGD     +IE            L+D +D+ I EPKR +DKP  +P++DV+ I G GTV  GRV+ GVL  G  +     GL  E+K      +EM  + L EA  GDN+G  ++ V   +++RG V   +K    +    F ++V +++
Sbjct:  126 VGVEYLVVFLNKTDLVD---DEELVELVEMEVRELLSEYDFPGDDIPVIKGSALKALEGDPEQVKVIEE-----------LMDTVDSYIPEPKRETDKPFLMPVEDVFTITGRGTVASGRVDRGVLTTGTEIEI--VGLKDEIKKTTVTGIEMFRKTLDEAQAGDNIGALLRGVDRNEIERGQVL--AKPGSIKTHKKFKAEVYVLS 314          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_GONPE (Elongation factor Tu, chloroplastic (Fragment) OS=Gonium pectorale GN=tufA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 63/204 (30.88%), Postives = 94/204 (46.08%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP------TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 582
            +GV  ++   NK D       K   + +  EV   L K  +  +++P +P S       +  +      + P       L+D +D+ I  P+R +DKP  L ++DV  I G GTV  GRVE G LK    V F   GL    +  V  +EM  + L E L GDNVG  ++ V  KD++RG V   +K         F +QV ++
Sbjct:   37 VGVPNIVVFLNKEDQVD---DKELLELVELEVRETLDKYEFPGDEIPVIPGSALLALEALIENPKTQRGENPWVDKIYQLMDKVDSYIPTPQRETDKPFLLAVEDVLSITGRGTVATGRVERGTLKISDTVEF--VGLKPTQSAVVTGLEMFKKTLDETLAGDNVGVLLRGVQKKDIERGMVI--AKPGTITPHTKFEAQVYVL 233          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_GEOSW (Elongation factor Tu OS=Geobacillus sp. (strain WCH70) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 60/200 (30.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 582
            +GV  ++   NK D       +   + +  EV   L +  +  ++VP +    +   EGD   E        K   L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK G    +V       +T V  VEM  + L +A  GDN+G  ++ V+  +++RG V   +K         F +QV ++
Sbjct:  126 VGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYDFPGDEVPVIKGSALKALEGDPQWEE-------KIIELMNAVDEYIPTPQREIDKPFMMPIEDVFSITGRGTVATGRVERGTLKVGDAVEIVGLADEPKSTTVTGVEMFRKLLDQAEAGDNIGALLRGVSRDEVERGQVL--AKPGSITPHTKFKAQVYVL 313          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCJ (Elongation factor Tu OS=Ehrlichia canis (strain Jake) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY--KGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVAS 522
            +GVK ++   NK D    +   +  +  ++E+   L K GY  + +  V  S  +    +E  T    +  K   L++AL+ I+ P R  DKP  + ++DV+ I G GTV  GR+E GV++ G  +     GL    +T    VEM H+AL     GDN G  ++ +  +D++RG V S
Sbjct:  125 VGVKDIVVWMNKCDVVDDEEMLSLVEMEIREL---LSKYGYPGDDIDVVRGSAVKA---LEEETGSGVWSEKIMELMNALEKISLPVREKDKPFLMSIEDVFSIPGRGTVVTGRIERGVIRVGDKIEI--VGLREIQSTVCTGVEMFHKALDAGEAGDNAGILLRGIKKEDVERGQVLS 295          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_DESDA (Elongation factor Tu OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 62/185 (33.51%), Postives = 88/185 (47.57%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD--NMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSK 531
            +GV Q++   NK D       +   + +  EV   L    +  + VP +    +   E D  N  E    LD      LLDA D+ I EP R  DKP  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT    VEM  + L +   GDN+G  ++     D++RG V +  K
Sbjct:  126 VGVPQLVVFLNKCDLVD---DEELLELVELEVRELLSSYDFPGDDVPVIRGSALKALESDDPNSAEAKCILD------LLDACDSFIPEPVRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVGEEVEIVGIKPTVKTT-CTGVEMFRKLLDQGEAGDNIGALLRGTKRDDVERGQVLAAPK 300          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP7 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7424) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 58/203 (28.57%), Postives = 95/203 (46.80%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG-----DNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM 582
            +GV  ++   NK D       +   + +  EV   L +  +  + +P V  S  +      D    +  + DW  K   L+D +D  I  P+R  DKP  + ++DV+ I G GTV  GR+E G +K G    +V       +T V  VEM  + L+E L GDNVG  ++ V  ++++RG V   +K    +    F  +V ++
Sbjct:  126 VGVPNLVVFLNKEDMVD---DEELLELVELEVRELLSEYEFPGDDIPIVKGSALKAVEALTDTPTIKKGDNDWVDKILALMDEVDAYIPTPERDIDKPFLMAIEDVFSISGRGTVATGRIERGKIKAGETVEIVGIKEKTKSTTVTGVEMFQKTLEEGLAGDNVGLLLRGVQKEEIERGMVI--AKPGSIKPHTQFEGEVYVL 323          
The following BLAST results are available for this feature:
BLAST of FC931663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCTA1.758e-1331.84Elongation factor Tu OS=Mycobacterium tuberculosis... [more]
EFTU_MYCBT1.758e-1331.84Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBP1.758e-1331.84Elongation factor Tu OS=Mycobacterium bovis (strai... [more]
EFTU_MYCBO1.758e-1331.84Elongation factor Tu OS=Mycobacterium bovis GN=tuf... [more]
EFTU_LEUCK1.758e-1328.99Elongation factor Tu OS=Leuconostoc citreum (strai... [more]
EFTU_GONPE1.758e-1330.88Elongation factor Tu, chloroplastic (Fragment) OS=... [more]
EFTU_GEOSW1.758e-1330.00Elongation factor Tu OS=Geobacillus sp. (strain WC... [more]
EFTU_EHRCJ1.758e-1331.28Elongation factor Tu OS=Ehrlichia canis (strain Ja... [more]
EFTU_DESDA1.758e-1333.51Elongation factor Tu OS=Desulfovibrio desulfurican... [more]
EFTU_CYAP71.758e-1328.57Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]

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Properties
Property NameValue
Genbank descriptionC34107F06EF PostHarvP1 Citrus clementina cDNA clone C34107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931663 ID=FC931663; Name=FC931663; organism=Citrus clementina; type=EST; length=689bp
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGG
TGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAA
CTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTT
CCGGGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCT
CAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGAGAAG
CTGCCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATT
GGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGT
CAAGTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATC
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