FC931663

Overview
NameFC931663
Unique NameFC931663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_CYAA5 (Elongation factor Tu OS=Cyanothece sp. (strain ATCC 51142) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 53/180 (29.44%), Postives = 87/180 (48.33%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL-----DWYKGPT-LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D       +   + +  EV   L +  +  + +P +  S     N +  + N+     +W      L+ A+D NI EP+R  DKP  + ++DV+ I G GTV  GR+E G +K G  +         +T V  VEM  + L E + GDNVG  ++ +  +D++RG V
Sbjct:  126 VGVPSLVVFLNKKDQVD---DEELLELVELEVRELLSEYDFPGDDIPIISGSALMAVNALIDNPNIKPGENEWTDQVLELMKAVDDNIPEPEREIDKPFLMAVEDVFSISGRGTVATGRIERGKVKVGETIEIVGIRDTRSTTVTGVEMFQKTLDEGMAGDNVGLLLRGIKKEDIERGMV 302          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_CHLCV (Elongation factor Tu OS=Chlamydophila caviae GN=tuf PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 57/178 (32.02%), Postives = 92/178 (51.69%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD-NMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE--VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK+D  + + ++   D +  E+S  L++ GY  +  P +    +   EGD + +E+   L        + A+D NI  P+R  DKP  +P++DV+ I G GTV  GR+E G++K G  V       T E  V  VEM  + L E   G+NVG  ++ +   D++RG V
Sbjct:  126 VGVPYIVVFLNKIDMISQEDAEL-VDLVEMELSELLEEKGY--KGCPIIRGSALKALEGDASYVEKIREL--------MQAVDDNIPTPEREVDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVGDKVQIVGLRDTRETIVTGVEMFRKELPEGQAGENVGLLLRGIGKNDVERGMV 292          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_CHACO (Elongation factor Tu, chloroplastic OS=Chara connivens GN=tufA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 65/238 (27.31%), Postives = 109/238 (45.80%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD-----WY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKS-----VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKID 681
            +GV  ++   NK D    +      D    EV   L    +  +KVP V  S       +    N       W  K   L+DA+D+ I  PKR  +KP  +P++DV+ I G GTV  GR+E G+LK G +V     GL  +++S     +EM    L++   G+N+G  ++ +  KD++RG V   ++         F +QV I+    + G  ++P    +     V+ +++   I+
Sbjct:  126 VGVPSIVVFLNKEDQVDDEEILQLVD---LEVRESLINYEFPGDKVPVVSGSALMALQALTEKPNTSRGENKWVDKIYELMDAVDSYIPTPKRDIEKPFLMPIEDVFSIQGRGTVATGRIERGILKLGDIVEL--IGLNEKIRSTVVTGLEMFRRLLEQGFAGENIGVLLRGIEKKDIERGMVI--AQPGTIEPHTRFEAQVYILRK--EEGGRHSPFFAGYRPQFFVRTADVTGVIE 354          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_CAMLR (Elongation factor Tu OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 65/239 (27.20%), Postives = 106/239 (44.35%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFG--PSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHI--AVKFSELVTKI 678
            +GV  ++   NK D        A   E+V+ E+   L    +  +  P +  S  +     +   + +W K   +LD +    D I  P R +DK   +P++DV+ I G GTV  GR+E GV+K G  +         TT V  VEM  + + +   GDNVG  ++    +D++RG V +  K        +F ++V I+N           N Y P     T+ +  A+K +E V  +
Sbjct:  126 VGVPYIVVFMNKADMV----DDAELLELVEMEIRELLSSYDFPGDDTPIISGSALQALEEAKAGQDGEWSK--KILDLMAAVDDYIPTPARDTDKDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIRDTQTTTVTGVEMFRKEMDQGEAGDNVGVLLRGTKKEDVERGMVLAKPKS--ITPHTDFEAEVYILNKDEGGRHTPFFNNYRPQFYVRTTDVTGAIKLAEGVEMV 356          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_BRASO (Elongation factor Tu OS=Bradyrhizobium sp. (strain ORS278) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D           + +  EV   L K  +  +K+P +  S        ++    D      +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT V  VEM  + L +   GDN+G  ++    +D++RG V
Sbjct:  126 VGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDKKLGHD-----AILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIRPTQKTT-VTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQV 294          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_BRASB (Elongation factor Tu OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D           + +  EV   L K  +  +K+P +  S        ++    D      +L+ + N++E    P+RP D+P  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT V  VEM  + L +   GDN+G  ++    +D++RG V
Sbjct:  126 VGVPALVVFLNKCDMVD---DPELLELVELEVRELLSKYEFPGDKIPIIKGSALAALEDSDKKLGHD-----AILELMRNVDEYIPQPERPIDQPFLMPVEDVFSISGRGTVVTGRVERGVIKVGEEIEIVGIRPTQKTT-VTGVEMFRKLLDQGQAGDNIGALLRGTKREDVERGQV 294          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_ARTCA (Elongation factor Tu OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D       +   D +  EV   L   G++ ++ P V +SG    EGD +  +S          L+ A+D ++ +P R  DKP  +P++DV+ I G GTV  GR E G L       +V   P   TT V  +EM H+ L EA  G+N G  ++ +   D++RG V
Sbjct:  128 VGVPYLLVALNKSDMVD---DEELLDLVEMEVRELLSSQGFDGDEAPVVRVSGLKALEGDPVWVKSVE-------DLMAAVDESVPDPVRDRDKPFLMPIEDVFTITGRGTVVTGRAERGTLAINSEVEIVGIRPVQKTT-VTGIEMFHKQLDEAWAGENCGLLLRGLKRDDVERGQV 294          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU_ARTAT (Elongation factor Tu OS=Arthrobacter aurescens (strain TC1) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF---EGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D       +   D +  EV   L   G++ ++ P V +SG    EGD +  +S          L+ A+D ++ +P R  DKP  +P++DV+ I G GTV  GR E G L       +V   P   TT V  +EM H+ L EA  G+N G  ++ +   D++RG V
Sbjct:  128 VGVPYLLVALNKSDMVD---DEELLDLVEMEVRELLSSQGFDGDEAPVVRVSGLKALEGDPVWVKSVQ-------DLMAAVDESVPDPVRDRDKPFLMPIEDVFTITGRGTVVTGRAERGTLAINSEVEIVGIRPIQKTT-VTGIEMFHKQLDEAWAGENCGLLLRGLKRDDVERGQV 294          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: EFTU1_STRRA (Elongation factor Tu-1 OS=Streptomyces ramocissimus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 56/175 (32.00%), Postives = 87/175 (49.71%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGM---VVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFV 516
            +GV  ++   NK D    +      +  V+E+ S  +  G +   V    +   EGD    +S  LD      L+ A+D +I EP+R  DKP  +P++DV+ I G GTV  GR+E GVLK      ++       TT V  +EM  + L E   G+NVG  ++ +  +D++RG V
Sbjct:  128 VGVPYIVVALNKADMVDDEEIMELVELEVRELLSEYEFPGDDLPVVRVSALKALEGDAQWTQSV-LD------LMKAVDESIPEPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDIIGIKTEKTTTTVTGIEMFRKLLDEGQAGENVGLLLRGIKREDVERGQV 295          
BLAST of FC931663 vs. ExPASy Swiss-Prot
Match: CYSN_SODGM (Sulfate adenylyltransferase subunit 1 OS=Sodalis glossinidius (strain morsitans) GN=cysN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 1
Query:    4 LGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRG 510
            LG++ ++   NKMD     + +  +  I ++   + +++  + + + FVP+S  EGDN+      + WY GPTLLD L+ +        +P R P+Q V +         G V  GVL+ G  V   PSG+T+ +  +      L EA  G+ V   +K+    D+ RG
Sbjct:  158 LGIRHLVVAVNKMDLVA--FDEQIFQGIRQDYLRFAEQLPVDLD-ITFVPLSALEGDNVAALGKAMPWYNGPTLLDVLETVEVINLNEQQPARFPVQYVNRPNLDFRGYAGTVAAGVLRVGQAVKVLPSGVTSTISRIVTFDGDLTEAWAGEAVTLVLKDEV--DISRG 321          
The following BLAST results are available for this feature:
BLAST of FC931663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CYAA51.758e-1329.44Elongation factor Tu OS=Cyanothece sp. (strain ATC... [more]
EFTU_CHLCV1.758e-1332.02Elongation factor Tu OS=Chlamydophila caviae GN=tu... [more]
EFTU_CHACO1.758e-1327.31Elongation factor Tu, chloroplastic OS=Chara conni... [more]
EFTU_CAMLR1.758e-1327.20Elongation factor Tu OS=Campylobacter lari (strain... [more]
EFTU_BRASO1.758e-1330.34Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_BRASB1.758e-1330.34Elongation factor Tu OS=Bradyrhizobium sp. (strain... [more]
EFTU_ARTCA1.758e-1332.02Elongation factor Tu OS=Arthrobacter chlorophenoli... [more]
EFTU_ARTAT1.758e-1332.02Elongation factor Tu OS=Arthrobacter aurescens (st... [more]
EFTU1_STRRA1.758e-1332.00Elongation factor Tu-1 OS=Streptomyces ramocissimu... [more]
CYSN_SODGM1.758e-1328.99Sulfate adenylyltransferase subunit 1 OS=Sodalis g... [more]

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Properties
Property NameValue
Genbank descriptionC34107F06EF PostHarvP1 Citrus clementina cDNA clone C34107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931663 ID=FC931663; Name=FC931663; organism=Citrus clementina; type=EST; length=689bp
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCAC
CACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATG
AGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTG
TACAAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGG
TGTCCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAA
CTGAGGTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTT
CCGGGTGACAATGTTGGTTTCAACGTGAAGAACGTTGCTGTCAAGGATCT
CAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGAGAAG
CTGCCAACTTCACCTCACAGGTCATCATCATGAACCACCCTGGCCAGATT
GGAAATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGT
CAAGTTTTCTGAGCTCGTGACGAAGATTGATAGGCGATC
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